Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00227 ATGTCTCCGCCCTCCACCAGTTTACATTCTGCCATCTTCGTCTATTGTTTAGTTGGTTTCAATTTGTTGGGCGCGATTTTTTCCTCATCTGTGGACTCTAGAGACTTCGATTATCAGCAGCGCCCTGTGATTCTTCCTCTCTATATTTCACCGACGAATTCTACCCATCAGCGCGTTTTGGACCGTGATCATAGTCTCCGGCACCTGTTGAACTTGGAAAAACCCCACTCGTCAAATGCTCGAATGAGGCTCTACGATGACCTCCTTACCAACGGGTATTACACGACGCGTCTTTGGATTGGGACTCCTCCACAAGAATTTGCTCTTATCGTGGACACCGGAAGTACTGTGACATACGTTCCATGCTCTAACTGCGTAGATTGCGGGAACCACCAGGATCCAAGGTTCCAACCGAAGTTGTCTAGCTCATATCAACCTGTTAAGTGCAATATCGATTGTAGCTGTGATGACAATGGAGTCCAGTGTACATACGAGAGACGGTATGCAGAGATGAGTACTAGCAGCGGTGTGCTTGCTGAGGACATCATGTCATTTGGAAAAGAAAGTGAACTTCTACCCCAGCGTGCAGTCTTTGGCTGTGAAACTATGGAAACTGGCGATCTTTATACCCAGCGTGCTGATGGGATTATGGGTTTGGGCCGTGGTACACTCAGTGTGATGGACCAACTTGTTGGCAAGGGTGCTGTGAGTAATTCATTTTCATTATGTTATGGTGGGATGGATGTTGGTGGGGGTGCAATGGTTCTTGGTGGGATCTCTTCACCCCCTGGTATGGTATTTACCCACTCGGACACATCTCGAAGCCCATATTATAATATAGAGTTGAAGGAAATACATGTTGCTGGGAAGCCATTGAAGTTGAATCCGAGGACTTTCGATGGGAAGTATGGATCTGTCTTGGATAGTGGAACTACATATGCTTATTTTCCAGAAAAAGCCTACTATGCATTTAAGGACGCTCTAATGAAGAAAATTAGTTTCCTGAAACAAATCAATGGTCCTGACCCGAATTTTAAAGATATTTGTTTTTCTGGTGCTGGGAGGGATGTGTCTGAACTTTCAAAAGTCTTTCCAGAGGTTGCTATGGTATTTGCCAATGGACAGAAAATTTCACTCTCTCCGGAGAACTACTTGTTCCGGCATACGAAGGTTAGTGGTGCATATTGTCTAGGAATCTTTAAAAATGGTAATGATCAGACAACACTTTTGGGAGGTATGGCGAAGTTTCCCTGGATTGTGGATAATTCTCTTTTGCGCTGTACACATTGTTTTACTGCTTTTGGCTGTGTAGTAAAGCTGCGTGGTCTCTTTTCATTGGCAGGAATTATTGTTCGTAATACCCTTGTCACCTATGATCGAGAGAACACCAAAATTGGGTTTTGGAAGACTAACTGTTCTGAACTTTGGAAGAATCTGCATTATCTTTCTCCTGCTCCTCCTCCAGCTCCTTTACCTTCCTATGGTCAGAATACAAGTAATGAAATTCCTCCACCTGTTTCTCCAACTGTACCATTTCTTTCCGGTGAATTTCAGGTTGGAGTCATAACATTTAATATGGTGCTTCATGCCAACAAATCCTCCGTGAAACTTAACATCACTGAGCTTGCAGAATTTATTGCCAATGAGCTTGAAGTAAATGTCTCACAGGTTCACGTGCTGAACTTTACATCGGGAGAAACTGATTTCTTCATTAGATGGGCCATCTTCCCTGCTGATTCTGCTGGTTATATATCTAATTCCACGGCAATGGACATAATTTCTCGCCTGAAGGAACATGACTTGCAACTTCCTGAAAAATTCGGAAGCTATCAGCTGGTTGAATTGAATGTTGAACCTCCATTAAAGAAGACATGGATGGAGCAGCACTTCTGGTCTATGATGTCTATTGTAGCAGCAGTTACCTTAGTTGTTGGATTGGCAGCCGGAAGCACGTGGCTGATTTGGAGATACAGACGGAGGGAGCTGAGTTCATATGAGCCTGTTGGTGCTGTCGGACCCGAGCAAGAGCTTCAGCCACTATAG 2043 44.15 MSPPSTSLHSAIFVYCLVGFNLLGAIFSSSVDSRDFDYQQRPVILPLYISPTNSTHQRVLDRDHSLRHLLNLEKPHSSNARMRLYDDLLTNGYYTTRLWIGTPPQEFALIVDTGSTVTYVPCSNCVDCGNHQDPRFQPKLSSSYQPVKCNIDCSCDDNGVQCTYERRYAEMSTSSGVLAEDIMSFGKESELLPQRAVFGCETMETGDLYTQRADGIMGLGRGTLSVMDQLVGKGAVSNSFSLCYGGMDVGGGAMVLGGISSPPGMVFTHSDTSRSPYYNIELKEIHVAGKPLKLNPRTFDGKYGSVLDSGTTYAYFPEKAYYAFKDALMKKISFLKQINGPDPNFKDICFSGAGRDVSELSKVFPEVAMVFANGQKISLSPENYLFRHTKVSGAYCLGIFKNGNDQTTLLGGMAKFPWIVDNSLLRCTHCFTAFGCVVKLRGLFSLAGIIVRNTLVTYDRENTKIGFWKTNCSELWKNLHYLSPAPPPAPLPSYGQNTSNEIPPPVSPTVPFLSGEFQVGVITFNMVLHANKSSVKLNITELAEFIANELEVNVSQVHVLNFTSGETDFFIRWAIFPADSAGYISNSTAMDIISRLKEHDLQLPEKFGSYQLVELNVEPPLKKTWMEQHFWSMMSIVAAVTLVVGLAAGSTWLIWRYRRRELSSYEPVGAVGPEQELQPL 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1277540 1283393 + Carg21794-RA Car09g00227 153964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00227 680 Pfam Xylanase inhibitor C-terminal 278 413 IPR032799 -
Car09g00227 680 Pfam Xylanase inhibitor N-terminal 94 258 IPR032861 -
Car09g00227 680 ProSiteProfiles Peptidase family A1 domain profile. 94 468 IPR033121 -
Car09g00227 680 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 109 120 IPR001969 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00227 - - - cmos:111442809 1266.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00347 Car-Chr2:2508507 Car09g00227 Car-Chr9:1277540 0 dispersed
Car09g00227 Car-Chr9:1277540 Car20g00842 Car-Chr20:5887911 0 dispersed
Car13g00608 Car-Chr13:7805265 Car09g00227 Car-Chr9:1277540 6.64E-11 dispersed
Car01g01406 Car-Chr1:12218081 Car09g00227 Car-Chr9:1277540 6.36E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00227 Car_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0