Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00229 ATGAGCTGGTGGTGGGCCGGAGCGATTGGCGCTGCTAAGAAGAAATTTGAAGAAGGTGAACCTCCGAGGAGCTTTGAGGGCGTCGCCCTGGTGATCGGCGTTACTGGTATCGTTGGCAACAGTCTCGCCGAGATTCTCCCTCTTTCCGACACTCCCGGCGGTCCATGGAAGGTCTACGGCGTCGCTCGGAGGTCGAGGCCAAGTTGGAACGCCGACCATCCCATCGAATACATTCAATGTGATATCTCCGATCCGGAAGACGCCGAAGCCAAACTCTCGCAGCTCGTTGATGTGACTCATCTCTTCTATGTCACATGGACCAAGCGATCCACCGAGCTCGAGAACTGCGAGGCCAACGTTAAAATGCTTCGCAACGTGTTGCGATCAGTGATCCCCAACGCGCCCAATCTCCGCCATATCTGCCTTCAAACTGGTACTAAGCACTACGTCGGATCCTTCGAGAGCATTGTCAACAAATCCGTGCAGCCGCACGATTCGCCCTTCACGGAGGATTTGCCTCGATTGAAATGCCCAAATTTCTATTACCCGCAAGAAGATTTGTTGTTGAAGAAATTGTAA 579 53.02 MSWWWAGAIGAAKKKFEEGEPPRSFEGVALVIGVTGIVGNSLAEILPLSDTPGGPWKVYGVARRSRPSWNADHPIEYIQCDISDPEDAEAKLSQLVDVTHLFYVTWTKRSTELENCEANVKMLRNVLRSVIPNAPNLRHICLQTGTKHYVGSFESIVNKSVQPHDSPFTEDLPRLKCPNFYYPQEDLLLKKL 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1286325 1287000 + Carg21792-RA Car09g00229 153966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00229 192 Pfam NAD dependent epimerase/dehydratase family 29 156 IPR001509 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00229 K22419 VEP1; Delta4-3-oxosteroid 5beta-reductase [EC:1.3.1.3] - csv:101204090 341.273
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01404 Car09g00229 CCT
Car01g01404 Car09g00229 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00229 Car-Chr9:1286325 Car13g00044 Car-Chr13:346780 4.13E-30 dispersed
Car01g01404 Car-Chr1:12211137 Car09g00229 Car-Chr9:1286325 3.42E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g678 Blo01g01500 . Bda01g00582 . . . . . . . Cma01g01798 Cma09g00274 Car01g01404 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01501 . . . . . . . . . . . Sed13g1794 Cmo01g01857 Cmo09g00270 . . . Car09g00229 . Cpe02g00210 Bhi09g03248 Tan01g4716 Cmetu04g1405 . Hepe01g1814 Mch11g0346 . Cla05g02092 Cam05g2245 Cec05g2264 Cco05g2305 Clacu05g2242 Cmu05g2105 Cre05g2228 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025887 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00229 Car_Chr09 FPKM 6.666426 6.243933 14.544191 13.346026 26.798351 28.563456 30.947552 15.969095 14.569025 16.007332