Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car09g00237 | ATGAGTTGCAGCGGCTGCAGAGTGCTTCGAAAGGGCTGCAACGAAGCTTGCGTTCTAAGGTCCAGTCTCCACTGGATTCATTCGCCGGAAGCCCAGGCCAACGCCACCTTGTTTCTCGCTAAATTCTTTGGCCGTAGTGATCTCTTGTCCTTCATCGCCGCCGTCCCCCATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAGGCTTGCGGCCGCACCGTCAACCCAGTTAGCGGCGCCGTTGGTCTCTTGTCCAGCGGGAACTGGCACGTCTGTCAGCTGGCGGCGGAAACCGTTCTCAGCGGCGGAGTTCTCCGCCCCATACCCGGAATCGAACTTTCGGGAAATCCCACGCGCAACGTCGATGATTCCTCCCTTACTTCCAATACCGATGTCTGGACCACCACCGGACAAAATCTTCAACTCTACCCATCCACTCCGTCGGATTTCCGGTGCCTCCCTGATCTCGCCGTCGCCGCCGGAAGAGCGAAGAATCATACCCTGGAGAATCGGCGGTCTCTAGATTCCGAAGACTCGATCATGACCAGCTTCGGAAGCGGCGACCGGCGGAAACAGAGGAAGCTTTTAAATTTATTCATCTGA | 609 | 55.99 | MSCSGCRVLRKGCNEACVLRSSLHWIHSPEAQANATLFLAKFFGRSDLLSFIAAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQLAAETVLSGGVLRPIPGIELSGNPTRNVDDSSLTSNTDVWTTTGQNLQLYPSTPSDFRCLPDLAVAAGRAKNHTLENRRSLDSEDSIMTSFGSGDRRKQRKLLNLFI | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1307442 | 1308120 | - | Carg21784-RA | Car09g00237 | 153974 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car09g00237 | 202 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 101 | IPR004883 | - | |
| Car09g00237 | 202 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g01399 | Car09g00237 | CCT | |
| Car01g01399 | Car09g00237 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car09g00237 | Car-Chr9:1307442 | Car14g00743 | Car-Chr14:4170324 | 6.10E-48 | dispersed | |
| Car01g01399 | Car-Chr1:12199842 | Car09g00237 | Car-Chr9:1307442 | 9.48E-113 | wgd | |
| Car03g00839 | Car-Chr3:6795366 | Car09g00237 | Car-Chr9:1307442 | 7.34E-61 | wgd | |
| Car07g00582 | Car-Chr7:2957023 | Car09g00237 | Car-Chr9:1307442 | 2.85E-59 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4045 | PF03195 | LOB | 1.60E-24 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car09g00237 | - | - | csv:101208953 | 343.969 |