Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00238 ATGGCTCTTGAAGCTCTGAATTCTCCCACCACGCCATCACCGGCTCTCCACTATGATGACCCTAGCCCCAATTCGATTGAGTCTTGGTCTAAGCGGAAGAGGACCAAGCGTCCACGGGGATTTGATAACCCTCCCACCGAGGAGGAGTATTTAGCGCTATGTCTCATCATGCTTGCTCGCGGAGGCGCAACCCCTACTGCCGACCCTGACCACCGACTTGAGTATGAAGTTCCCATTCCGGCTCAACCCATATCGGTTGTTAAGCTTAGCTACAAGTGCTCTGTTTGCAATAAGGCGTTTTCGTCTTACCAGGCGTTGGGTGGACATAAAGCCAGCCATAGAAAATCAGCTACAGGGGAAGACCAATCCACTTCCTCTACTACTACTACGACCACTACTTCCGCCACCGCCACCGCCTCCGTCGGTGGGGGTAAATCCCACGAGTGCTCTATTTGTCACAAGTCTTTTCCGACTGGCCAGGCCTTGGGCGGCCACAAGCGTTGCCACTACGATGGCGGAATCAACAACAACAACAACAACAACACCACCAACAACAACAACGCCACTGTGACATCGTCGGAAGGAGTTGGGTCCACCCACACAAAAAGCCACAGCCACCGCGACTTTGACCTCAACCTCCCTGCTTTGCCAGAATTATCACCGGGATTCTTCATCTCTGCCGGCGACGACGAGGTCCAAAGCCCATTACCTCTGAAGAAGCCTCGTGTATTGACGATTCCCAAAATCGAAATTTCTCAAAATTAA 765 52.29 MALEALNSPTTPSPALHYDDPSPNSIESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATPTADPDHRLEYEVPIPAQPISVVKLSYKCSVCNKAFSSYQALGGHKASHRKSATGEDQSTSSTTTTTTTSATATASVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGINNNNNNNTTNNNNATVTSSEGVGSTHTKSHSHRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRVLTIPKIEISQN 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1312474 1313238 - Carg21783-RA Car09g00238 153975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00238 254 Pfam C2H2-type zinc finger 147 171 - -
Car09g00238 254 Pfam C2H2-type zinc finger 91 115 - -
Car09g00238 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Car09g00238 254 MobiDBLite consensus disorder prediction 176 206 - -
Car09g00238 254 MobiDBLite consensus disorder prediction 118 143 - -
Car09g00238 254 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Car09g00238 254 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Car09g00238 254 MobiDBLite consensus disorder prediction 1 44 - -
Car09g00238 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
Car09g00238 254 MobiDBLite consensus disorder prediction 113 145 - -
Car09g00238 254 MobiDBLite consensus disorder prediction 1 18 - -
Car09g00238 254 MobiDBLite consensus disorder prediction 176 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00238 Car-Chr9:1312474 Car02g01154 Car-Chr2:7920188 2.16E-21 dispersed
Car01g01398 Car-Chr1:12195770 Car09g00238 Car-Chr9:1312474 3.13E-147 wgd
Car11g01139 Car-Chr11:9136879 Car09g00238 Car-Chr9:1312474 1.22E-45 wgd
Car12g00537 Car-Chr12:3570839 Car09g00238 Car-Chr9:1312474 7.38E-80 wgd
Car19g00415 Car-Chr19:6017365 Car09g00238 Car-Chr9:1312474 1.42E-46 wgd
Car05g00127 Car-Chr5:647835 Car09g00238 Car-Chr9:1312474 1.83E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4046 PF13912 zf-C2H2_6 1.50E-12 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00238 - - csv:101221218 432.18