Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00239 ATGGATTCTTTTGCAGGTCTCATCGGGGAAGGGGAATGGGATTTGTGCAGCTCAATTTTATCTATGGAGGAGCTTGATTTCACGCCGCTTATTCCTCCGCCCACGGCGGAGATGCCCGATTGGGTCTGTCATTTGGATTCTTTCACGCCCAATTTGCCTTCTTGTGGCAATGCTATCGATCAATTCCCCTGTATTGCTGCTGCTGATCATTATATGTCCATGTCTAATGCTGCCATTGAAGAGAACAAGATGGACTCCATTTTCTCAGCCTGTACTGACGTTTTGCTGCAAGAGATCTCTGTTTTTTCGGGTGAAGATAGATATCTAAACATGGATGTTCAAACCCAGATAGGGAATGATCATAATGCTACCAATTCTGCTAAGGCATTCCATCACAAAAGGAAATCCATTGTCGTCGCTGATGATGATGATCATCATCACAATAAGCTCAACAACCCTACTAAGAAAATTCGTACTTCAAACAATAAAATTAGGAAAGCTACACAGAATAGCAATAAAAAATTGAGCACTCGGCGGCGCAAATGTGAAGAGGATCAGGAATCTGGAGGGCCTGATATGAACAGCTGCAGTAGCGCTAACTCATCAGAGGATGACAGCGCTTCACAAGATACTAATGGTGGTGGCGCTGTTTTAGAGGGCGAGGCATCGCCGCCAAAAGCCAAAACCAGAGCCACCAGAGGCTCTGCTACTGATCCACAAAGCCTTTATGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGGCTTAGAATTCTGCAGAAACTTGTCCCTAATGGAACAAAGGTTGACATCAGCACAATGCTTGAGGAAGCAGTTCATTACGTGAAATTTCTGCAGCTTCAGATAAAGGTATGGACTTCAATTTGTTCATTAAGTTGGGTTCTGAATGATTTGATTTCAAATGCATTGGTCATGATTTCGTTTTATTTGCAGCTTTTGAGCTCTGATGAGATGTGGATGTATGCTCCAATTGCTTACAATGGGATGGATATTGGTCTGCACCAGAAGCTTCCTTCTTTTTTGTGA 1044 43.3 MDSFAGLIGEGEWDLCSSILSMEELDFTPLIPPPTAEMPDWVCHLDSFTPNLPSCGNAIDQFPCIAAADHYMSMSNAAIEENKMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQIGNDHNATNSAKAFHHKRKSIVVADDDDHHHNKLNNPTKKIRTSNNKIRKATQNSNKKLSTRRRKCEEDQESGGPDMNSCSSANSSEDDSASQDTNGGGAVLEGEASPPKAKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKVWTSICSLSWVLNDLISNALVMISFYLQLLSSDEMWMYAPIAYNGMDIGLHQKLPSFL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1316589 1317950 + Carg21782-RA Car09g00239 153976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00239 347 MobiDBLite consensus disorder prediction 154 171 - -
Car09g00239 347 MobiDBLite consensus disorder prediction 190 213 - -
Car09g00239 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 284 IPR011598 GO:0046983
Car09g00239 347 MobiDBLite consensus disorder prediction 138 245 - -
Car09g00239 347 Pfam Helix-loop-helix DNA-binding domain 245 285 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00239 - - - csv:101209196 298.901
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00125 Car09g00239 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02217 Car-Chr4:18009386 Car09g00239 Car-Chr9:1316589 7.43E-10 dispersed
Car09g00239 Car-Chr9:1316589 Car12g01123 Car-Chr12:10941072 2.61E-21 dispersed
Car17g00527 Car-Chr17:4897604 Car09g00239 Car-Chr9:1316589 1.35E-06 dispersed
Car17g00699 Car-Chr17:6399517 Car09g00239 Car-Chr9:1316589 5.19E-17 dispersed
Car11g01142 Car-Chr11:9163980 Car09g00239 Car-Chr9:1316589 4.23E-45 wgd
Car12g00539 Car-Chr12:3584220 Car09g00239 Car-Chr9:1316589 1.68E-24 wgd
Car16g00289 Car-Chr16:1789643 Car09g00239 Car-Chr9:1316589 1.32E-46 wgd
Car19g00413 Car-Chr19:5990413 Car09g00239 Car-Chr9:1316589 1.71E-07 wgd
Car04g00421 Car-Chr4:2404628 Car09g00239 Car-Chr9:1316589 3.13E-47 wgd
Car05g00125 Car-Chr5:639016 Car09g00239 Car-Chr9:1316589 1.66E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g659 Blo01g01498 . Bda01g00587 . Bpe02g00449 . . Bma01g02249 Cmo05g00146 . . Cma09g00285 . . Sed05g2626 Cpe06g00195 Cpe07g00514 Bhi04g00411 Tan02g1022 Cmetu01g0392 . Hepe08g1329 . Lcy13g2130 Cla08g01617 Cam08g2119 Cec08g1704 Cco08g1827 Clacu08g1804 . Cre08g1586 . . . . Lsi04g01492 Csa04g02472 . Cme03g02098 Blo17g00860 Blo18g00720 . Bda01g01589 Bpe02g01776 Bpe05g00472 . Bma05g00057 Sed13g1799 . . Cma12g00596 Cma05g00143 Car05g00125 Car09g00239 Cpe11g00124 . Bhi09g03235 Tan01g4705 Cmetu07g1689 . Hepe01g1823 Mch11g0358 . Cla05g02102 Cam05g2254 Cec05g2274 Cco05g2315 Clacu05g2250 Cmu05g2113 Cre05g2237 Lsi08g01523 Csa02g01899 Chy07g00184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000893 1 3 0 1 2 3 5 3 3 3 3 3 5 3 3 3 3 2 5 3 3 3 3 3 3 3 3 4 3 2 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4047 PF00010 HLH 1.10E-08 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00239 Car_Chr09 FPKM 4.061582 3.150557 3.494514 4.261482 6.825341 5.946604 6.731344 0.449736 0.465345 0.425945