Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00253 ATTTTTCGTTGGGGGGGGGGGTTTGAGGAAAGTGCACTGTTCTCAAGTTCATTTGTGGTTACTGATGATGACGGCGGCGATGGTGAAGAAGAAGAAGAAGGAGGCCTTTCTTCCGACCAACCAAGGGGTTCAGATGAAGAGACAAAAGAATGCCCCCGTTCGCCATTTTTGCTGCTGCTTCTGATTGTTAGTGAGAAGAATAAGATTGTGGAGGAAAGAAAAAGGTTTTGGAAAATGCCGATGTACCAGCCGGAGCTGGGTGTGGGTGGTGGTGGGCAAGTTCTTGATGTAGAAACCGCCGTGAAAGATGGTATTCTCGGCGGCGGTGGGTTCATTTGCGAGGGTGGAACGGCGGAGAAATTGGATCTGAAGGAGATGGTGGAGGAGCTTGAGAACATAGAGGTTCCTTCGGTTTTTATCTGTCCAATTTCATTGGAGCCAATGCGAGATCCTGTAACGCTTTGCACAGGACAGACCTACGAACGTTCCAACATCATGAAATGGTTTTCTCTCGGCCATATCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATTACTCCCAATAACACTCTTCACCAACTCATTCACAGCTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCAGAGGATGTGCAGGGGAGGGCTCTCGAGCTCTTAGACGCATTGAAAAAGGTCAAGGGCCAAGCCAGAGTCCGAGCTTTGAAGGAGCTTCGCCATGTCGTGGCTTTGAATTCTTCGACCAAGAACACCGTGGAAGACAATGGCGGTCTTGCTTTGATTTCTTCTCTGTTGGGTCCTTTCACATCCCACGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCAAGGAGAAACCTCGTCCAACCCGCCAAGATTTCGTTAATGGTGGACATGTTAAACGAGGGATCCACAGACACCAAAATCAACTGCACCAGATTGATTCAAACGCTCCTCGATGGGGACGATTGTGGAGCGGACACTGTCTCAGGTCTAAGCCTGGTGGTTGGATTGTTAAGATTAATCAAAGAAAAACAACACCCAAATGGCGTTCTTGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCCAAGAACAAGTCAAGAACTCAATAGTGAGCATTGGGGCAATCCCACAGCTGGTTGAAATTCTCCCAAATTTCAGCCCCGAATCTTTGGAGCTAGCCCTTCACGTACTGGATTCAGTTTCATCCCTCTCAGACGGAAGGGTGGCCTTGAAAGATTGCCCCAAAACCATTCCAAATTTGGTGAAGTTGCTAATGAGAGTGTCGGAGAGCTGCACTCAGCTGGCGTTATCAATCTTATGGGCGGTCTGTAAACTCGCCCCTGAAGAATGTGCATCGCAAGCTGTGGAAGCAGGCTTAGCCGCCAAACTTCTTCTAGTGATTCAGAGCGGCTGCAATCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTCTGCAGCTTGAATTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGAACAATACAA 1557 48.43 IFRWGGGFEESALFSSSFVVTDDDGGDGEEEEEGGLSSDQPRGSDEETKECPRSPFLLLLLIVSEKNKIVEERKRFWKMPMYQPELGVGGGGQVLDVETAVKDGILGGGGFICEGGTAEKLDLKEMVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNIMKWFSLGHITCPTTMQELWDDSITPNNTLHQLIHSWFSQKYLAMKKRSEDVQGRALELLDALKKVKGQARVRALKELRHVVALNSSTKNTVEDNGGLALISSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIQTLLDGDDCGADTVSGLSLVVGLLRLIKEKQHPNGVLAGLRLLKALCSQEQVKNSIVSIGAIPQLVEILPNFSPESLELALHVLDSVSSLSDGRVALKDCPKTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 519
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1395177 1397034 + Carg21768-RA Car09g00253 153990
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car09g00253 519 MobiDBLite consensus disorder prediction 35 50 - -
Car09g00253 519 ProSiteProfiles U-box domain profile. 134 208 IPR003613 GO:0004842|GO:0016567
Car09g00253 519 Pfam U-box domain 135 205 IPR003613 GO:0004842|GO:0016567
Car09g00253 519 MobiDBLite consensus disorder prediction 15 50 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Car01g01385 Car09g00253 CCT
Car09g00253 Car12g00549 CCT
Car05g00111 Car09g00253 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00253 Car-Chr9:1395177 Car04g00082 Car-Chr4:435930 1.28E-34 dispersed
Car01g01385 Car-Chr1:12117447 Car09g00253 Car-Chr9:1395177 0 wgd
Car12g00549 Car-Chr12:3650535 Car09g00253 Car-Chr9:1395177 0 wgd
Car05g00111 Car-Chr5:584617 Car09g00253 Car-Chr9:1395177 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00253 - - csv:101223113 741.11