Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00259 ATGGAAAATCTGTCTCAGTCCTCAGGTGGACAGTTTCGGCCAGTTATCCCAGCACAACAAGGCCAGACGTTCATTTCATCATCTGCCCAACAGTTCCAGTTAGCAGGGCAGAATATATCTTCTTCAAATGTTGGAGGGCCAGCTGGTCAAGTCCAGCAACATCAATATCCTCAATCAATACCGCAGTTAGTTCCAAGGCCTGGCCATCCTACCTACATCGCTTCTTCATCCCAGCCTATACAAATGCCTTATGTTCAGACAAGGCCTCTTACTTCTGTCCCACCTCAGTCCCAGCAAAATGTGCCTGCACCAAATAATCATATGCATGGCTTGGGTGCTCATGGACTACCTCTTTCTTCACCATATACCTTCCAGTCAATGTCACAAATGCATGCACCCGTTGGAGTTGGTAATAGCCAACCTTGGCTGTCTTCTGTAAGCCAAACTACAAACACCGTCTCACCGATCGAGCAAGCTAATCAGAACTCTTCAGTTTCTGCCGCAAACCCTCAGTCTTCATCTGATTGGCAAGAGCATTCATCAGCTGATGGAAGAAGGTATTATTACAACAAAAAAACCAAACAGTCCAGTTGGGAGAAGCCATTGGAACTTATGACACCACTTGAGAGGGCTGATGCATCAACTGTGTGGAAGGAATTTACTGCTCCAGATGGAAGAAAGTACTATTACAATAAGGTGACGAAAGAATCAAAGTGGACCATTCCAGAAGAACTGAAGTTGGCTCGTGAGCAGGCTCAGAAAGAAGCTGCCCAAGGAACACAAACAGATATAGCTGCTACAACACCTCAACCTACACCTGCTGTTGGTGTCTTCCATACTGAAACACCAGCAATTGCATCTGTTAACTCCAGCATTTCTCCAACGGTATCTGGGGTTGCATCGAGTCCAGTTCCAGTCACTCCTTTTGTTTCCGTATCCAATTCTCCTTCAGTGGTGGCTTCTGGGTCATTGACCAATACTGGCACTCCCATTGCTTTAACAACTAGTGTGCCAGGAACAGTTTCTTCTCAATCTGTCGCTGCTGCTGGAGGTACCGGTCCTCCTGCTGTGCTCCATGCCAATGCTTCGTCAGTGACTCCTTTCGAAAGCCTTGCATCTCATGATGTCAAAAATTCTGTTGACGGAACTTCTACAGAAGACATCGAGGAAGCAAGGAAGGGAATGGCAGTTGCAGGAAAAGTTAATGAGACCGTTTTAGAGGAAAAATCTGCTGATGATGAACCTTTAATATTTGCCAACAAACTGGAGGCAAAGAATGCATTCAAAGCGCTTCTGGAATCTGTCAACGTAAAATCTGATTGGACGTGGGAGCAGGCTATGCGAGAAATAATTAATGACAAAAGATATGGTGCCTTGAAAACTCTTGGTGAACGGAAGCAAGCATTCCATGAGTATTTAGGACACAGGAAAAAATTGGATGCGGAGGAAAGACGTATAAAACAGAAAAAAGCTCGTGAGGAGTTCACCAAGATGTTGGAAGAGTCCAAGGAACTCACATCATCTACCAGATGGAGCAAAGCTGTTAGTATGTTCGAGAATGATGAACGGTTCAAAGCTGTTGAACGTTCTAGAGACCGGGAGGATCTTTTTGAAAGCTACATAGTGGAACTTGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTGCTGAATATAGGAACTTCCTTGAGTCATGTGATTATATAAAGGTGAACAGCCAGTGGCGGAAAGTACAAGATCGATTGGAAGACGATGAAAGATGCTCACGTCTTGAGAAACTTGATCGCTTGCTTATTTTCCAGGACTATATACGTGACTTGGAAAAGGAGGAAGAGGAGCAGAAAAAGATACAAAAGGAACGTGTGAGACGAATTGAAAGAAAAAACCGCGACGAATTTCGCAAACTCTTGGATGAACAAATTACTGCTGGTATTCTTACAGCTAAGACTTTCTGGCGTGATTACTGTTTGAAGGTCAAGGAGTTGCCTCAGTATCAAGCCGTTGCTTCTAATATATCTGGCTCAACACCAAAGGACTTGTTTGAGGATGTTCTGGAGGAATTAGAGAATAAGTATCATGAAGAAAAAGCTCAGATAAAAGACGTGATGAAGGCAGAGAAGATTACCATCACTTCATCATGGACGTTTGATGACTTTAAGGCTGCCATTGAAGAGGGTGGTTCTCTTGCAGTTTCAGATATAAATTTTAAGCTTGTATATGAGGACTTACTAGAAAGAGCCAAAGAAAAGGAGGAGAAAGAAGCCAAAAGGCGTCAACGTCTGGCTGATGACTTCTCAGGACTTCTCCATACATTCAAGGAGATTACGAATTCTTCCAACTGGGAGGATAGCAAACATCTTTTTGAAGAGAGTGAAGAATATAGATCAATTGGGGAAGAGAGCTTTGCGAAGGAAGTTTTTGAGGAATACATCATTCATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGCGTGAGGAGGAGAAGGCTAAGAAGGAAAAAGAACGTGAGGAAAAAGAGAAGCGGAAGGAGAAAGAGCGAAAGGAGAAGGAAAGAGAACGTGAAAAGGAAAAGGGCCGGGTTAAGAAGGATGAAACAGATAGTGAAAATGTGGATGCAAGCGAAACTCATGTCTACAGAGAAGACAAGAAAAGGGAGAAGGACAAAGATAGGAAACATCGTAAGCGACATCATAGTGCCACTGATGATGGTGGTTCTGATAAAGATGAGAGAGAGGAGTCTAAGAAGTCCCGCAAACATGGTAGTGACCGAAAGAAATCAAGGAAGCACGCATATTCACCTGAATCAGACAGTGAGAGTAGGCACAGAAGGCACAAGAGAGATCATCGAGATGGTTCCCGGAGAAATCACGACGAACTAGAAGACGGGGAGCTTGGCGAGGATGGGGAAATTCAATAG 2931 43.77 MENLSQSSGGQFRPVIPAQQGQTFISSSAQQFQLAGQNISSSNVGGPAGQVQQHQYPQSIPQLVPRPGHPTYIASSSQPIQMPYVQTRPLTSVPPQSQQNVPAPNNHMHGLGAHGLPLSSPYTFQSMSQMHAPVGVGNSQPWLSSVSQTTNTVSPIEQANQNSSVSAANPQSSSDWQEHSSADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTIPEELKLAREQAQKEAAQGTQTDIAATTPQPTPAVGVFHTETPAIASVNSSISPTVSGVASSPVPVTPFVSVSNSPSVVASGSLTNTGTPIALTTSVPGTVSSQSVAAAGGTGPPAVLHANASSVTPFESLASHDVKNSVDGTSTEDIEEARKGMAVAGKVNETVLEEKSADDEPLIFANKLEAKNAFKALLESVNVKSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIKQKKAREEFTKMLEESKELTSSTRWSKAVSMFENDERFKAVERSRDREDLFESYIVELERKEKERAAEEHKKNIAEYRNFLESCDYIKVNSQWRKVQDRLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKERVRRIERKNRDEFRKLLDEQITAGILTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLEELENKYHEEKAQIKDVMKAEKITITSSWTFDDFKAAIEEGGSLAVSDINFKLVYEDLLERAKEKEEKEAKRRQRLADDFSGLLHTFKEITNSSNWEDSKHLFEESEEYRSIGEESFAKEVFEEYIIHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKEREREKEKGRVKKDETDSENVDASETHVYREDKKREKDKDRKHRKRHHSATDDGGSDKDEREESKKSRKHGSDRKKSRKHAYSPESDSESRHRRHKRDHRDGSRRNHDELEDGELGEDGEIQ 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1415422 1425172 - Carg21762-RA Car09g00259 153996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00259 976 ProSiteProfiles FF domain profile. 421 475 IPR002713 -
Car09g00259 976 ProSiteProfiles FF domain profile. 488 543 IPR002713 -
Car09g00259 976 MobiDBLite consensus disorder prediction 91 114 - -
Car09g00259 976 Coils Coil 815 871 - -
Car09g00259 976 MobiDBLite consensus disorder prediction 901 923 - -
Car09g00259 976 Pfam FF domain 767 814 IPR002713 -
Car09g00259 976 Pfam FF domain 490 540 IPR002713 -
Car09g00259 976 Pfam FF domain 558 607 IPR002713 -
Car09g00259 976 Pfam FF domain 423 472 IPR002713 -
Car09g00259 976 Pfam FF domain 632 687 IPR002713 -
Car09g00259 976 ProSiteProfiles FF domain profile. 549 610 IPR002713 -
Car09g00259 976 ProSiteProfiles WW/rsp5/WWP domain profile. 170 203 IPR001202 GO:0005515
Car09g00259 976 ProSitePatterns WW/rsp5/WWP domain signature. 176 201 IPR001202 GO:0005515
Car09g00259 976 MobiDBLite consensus disorder prediction 91 105 - -
Car09g00259 976 Coils Coil 682 709 - -
Car09g00259 976 MobiDBLite consensus disorder prediction 159 178 - -
Car09g00259 976 Pfam WW domain 174 201 IPR001202 GO:0005515
Car09g00259 976 Pfam WW domain 217 242 IPR001202 GO:0005515
Car09g00259 976 ProSiteProfiles WW/rsp5/WWP domain profile. 211 244 IPR001202 GO:0005515
Car09g00259 976 MobiDBLite consensus disorder prediction 822 976 - -
Car09g00259 976 MobiDBLite consensus disorder prediction 822 892 - -
Car09g00259 976 Coils Coil 604 632 - -
Car09g00259 976 Coils Coil 537 566 - -
Car09g00259 976 MobiDBLite consensus disorder prediction 159 181 - -
Car09g00259 976 MobiDBLite consensus disorder prediction 932 948 - -
Car09g00259 976 ProSiteProfiles FF domain profile. 628 691 IPR002713 -
Car09g00259 976 Coils Coil 744 768 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00259 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 1509.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01380 Car09g00259 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00259 Car-Chr9:1415422 Car08g01154 Car-Chr8:7749454 7.92E-07 dispersed
Car17g00588 Car-Chr17:5622246 Car09g00259 Car-Chr9:1415422 1.60E-09 transposed
Car01g01380 Car-Chr1:12090529 Car09g00259 Car-Chr9:1415422 0 wgd
Car04g00409 Car-Chr4:2313393 Car09g00259 Car-Chr9:1415422 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00259 Car_Chr09 FPKM 7.280125 7.400625 9.237508 11.498363 19.701942 24.282934 19.663731 14.93811 16.809029 14.560813