Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00261 ATGACTATGGAAGTTACTTCTGAATCTCAGCAGCATTCTGTGTACCACCACCAAAGCCAGCCAACTCCAGCAATAGCTATCTCCAACACCATGTCAAATAGCTTCTCAGCTTCCCAGCACTACAATGGTGATTTTCTGTCTCCCCTGTCTGTAATGCCGCTCAAGTCAGATGGGTCTCTTTGTATCATGGACTCAATCAGCAGATCACAAACTCCAGAAACATTGCCAAACATCTCCCCAAAACTTGAGGACTTTCTTGGTGGTGCAACTCATGGAAGAGAGGCGGCCACAGCTCTAAGCTTAGACAGCAGATATTACAATCAAAATCCTGAGGCTAACTCAGAAAGACAACAACGTATTCTTCTTCATTCTGAGCGATACTATTCTGGAATGTTCCATTATCCTGCTGAGGATGTCAACAAGGAGTCTCATATTGCAAGTTATTGCTCTGAAATTCGACAAGATATGGAGCAGCGCATCAATGGCTGCTTTGGAGGAGGGAGGAATTGCCAAGACTTGCAGACACTTAGCTTGTCCATGAGCCCTGGCTCTCAGTCTAGTTGTGTTACTACACCAAGCCAAATTTCTCAATCTGGACAAGCCACCATGGAGACAAAGAAAAGGGCTTTGGCTGATCGAAAGCAGCCGGTCCATCGGAAGTCGATCGGCACGTTCGGACAAAGAACTTCACAGTATAGAGACATAGATGGACCGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACCAGGAAAGGGAGACAAGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCCTATGATCTTGCAGCTCTCAAGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTCCGTGGCATAAACGCCGTGACAAACTTCGACACTTCAAGGTACGACGTAGAAAGGATCATGGCGAGCAGCAGCCTCCTCTCAGGAGAATTTGCAAGACGAAATAGAGATCACAAACCAACCAACACCATCAAACATGAAGAACCAAAGCAGAACATCTCTCGAACCGACCCCGCGGAGATATACAACAACAATTTAGATTGGAGGACTGTATTCCACGAGAACCTGCTGCTGGATCCAAGCGCAAGCGTGGAATCCATAGACCAAAAGTCCATGGCCTCGAGCGGCAGATACCTGAATAATCTGATCGGAGTCGTCGTCGAAACCGAAGGTTCAAGCAAGTACAAGGCTCAATTCTCCAATGCTTCATCTGTGGTGAGCAGCTTGAGCAGCTCAAGGGAAACTAGTCCTGACAAGCCAAATGGCTCCTCCTCGGTTCCATTTGGAAGCAATGGAAGAAGTATATGGCTCCCATCACCACCGCAAATGAGGCCAGCTCCTACTTCTTTGCCTGTTGAGTCAACTGTTGTTTGGAATGATGCCTAA 1431 46.89 MTMEVTSESQQHSVYHHQSQPTPAIAISNTMSNSFSASQHYNGDFLSPLSVMPLKSDGSLCIMDSISRSQTPETLPNISPKLEDFLGGATHGREAATALSLDSRYYNQNPEANSERQQRILLHSERYYSGMFHYPAEDVNKESHIASYCSEIRQDMEQRINGCFGGGRNCQDLQTLSLSMSPGSQSSCVTTPSQISQSGQATMETKKRALADRKQPVHRKSIGTFGQRTSQYRDIDGPVDMRLICGTIVVRRKVKPGKGDKVAMIWRRKQQEPMILQLSSTQEEAAEAYDIAAIKFRGINAVTNFDTSRYDVERIMASSSLLSGEFARRNRDHKPTNTIKHEEPKQNISRTDPAEIYNNNLDWRTVFHENLLLDPSASVESIDQKSMASSGRYLNNLIGVVVETEGSSKYKAQFSNASSVVSSLSSSRETSPDKPNGSSSVPFGSNGRSIWLPSPPQMRPAPTSLPVESTVVWNDA 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1428446 1431402 + Carg21760-RA Car09g00261 153998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00261 476 MobiDBLite consensus disorder prediction 330 349 - -
Car09g00261 476 ProSiteProfiles AP2/ERF domain profile. 231 306 IPR001471 GO:0003700|GO:0006355
Car09g00261 476 MobiDBLite consensus disorder prediction 330 353 - -
Car09g00261 476 MobiDBLite consensus disorder prediction 425 476 - -
Car09g00261 476 MobiDBLite consensus disorder prediction 425 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00261 K09285 OVM, ANT; AP2-like factor, ANT lineage - csv:101212143 348.977
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01376 Car09g00261 CCT
Car05g00104 Car09g00261 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00261 Car-Chr9:1428446 Car05g00741 Car-Chr5:5415780 2.65E-16 dispersed
Car01g01376 Car-Chr1:12078855 Car09g00261 Car-Chr9:1428446 1.24E-46 wgd
Car12g00555 Car-Chr12:3699394 Car09g00261 Car-Chr9:1428446 3.80E-26 wgd
Car03g00809 Car-Chr3:6661442 Car09g00261 Car-Chr9:1428446 3.40E-29 wgd
Car05g00104 Car-Chr5:544015 Car09g00261 Car-Chr9:1428446 2.35E-33 wgd
Car07g00553 Car-Chr7:2818030 Car09g00261 Car-Chr9:1428446 8.95E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g608 Blo01g01486 . Bda01g00600 Bda03g00160 . . . . Cmo05g00125 Cmo12g00550 . . Car01g01376 . Sed10g1152 . . Bhi04g00456 Tan02g1691 Cmetu03g0539 . Hepe08g1355 . Lcy13g2154 . . . . . . . . . . . Lsi04g01456 . . . . . . . . . . . . Cmo01g01825 Cmo09g00310 . Cma05g00122 Car05g00104 Car09g00261 Cpe11g00106 . Bhi09g03196 . . . . . . . . . . . . . Lsi08g01547 Csa02g01870 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000570 3 7 3 2 2 3 6 3 3 3 3 3 6 3 5 5 3 3 6 3 3 3 3 3 3 3 3 5 4 1 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00261 Car_Chr09 FPKM 1.036513 1.451148 0.682221 0.899524 24.874432 21.856503 23.427874 0.0 0.135282 0.0