Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00264 ATGACGATTATCGTTGCCGCCGACAGAAAGTACCGGCGGAGCCCTAGAAAGTCCCTACTCCCTGAAAAATACGACCATCAGGAGCCTCTGGAAGGGTTAGAGGGCGCATCGTTCTCCGGCGCCGTCTTCAACCTCTCGAGCACCATCGTCGGGGCTGGTATCATGGCTCTCCCGGCCGCCGTGAAGCAATTAGGTCTAATTCCGGGCTTAATCATGATCATCCTCGGATCTACATTGACGGAGTTGTCAATTGACTTTATCCTAAAATTCTCTCGGACATCCAAATCCGCTACGTACGCCGGCGCCGTCGGCGACTCTCTCGGAAGCGCCGGACGGACCCTCTTGCAGGTTTGCATCGTGGTCAATAACTTGGGTATGCTCATCGTCTACATGATCATCATCGGCGATGTGTTTTCGGGAACAACCACAAATAACGTCCACCATAAGGGCGTGATGGAAGAATGGTTCGGTCAACATTGGTGGACCAGCCGCATATCCTTGATGCTGTTTACCACGCTTCTAATTTTTGCGCCTCTAATCTCCTTCAAACGCGTAGATTCCTTGAGATACACATCATCTTTATCAGTGGGCTTGGCCATTGTCTTCGTGGCAATCACTGCTGGAGTATCCATTGCAAAATTGATGGATGGGAGTATTGGAATGCCGCGACTGATGCCTGAACTTATCGATCAGGCATCATTTTGGCAACTTTTTACCACTGTTCCAATTCTAGTCACTGCCTATATCTGTCACCATAATGTTCTCCCGATTGAGAATGAGCTGAAAGATCCGACACAAATGAAGTCAATAGTTCGAACATCTCTAATAATATGCTCGTCGTTATATATCGCGACGAGCTTCTTCGGATTTATCCTGTTTGGAGACCAAACGTTGGATGATGTCCTTGCCAATTTCGATGGAGATCTTGGACTTCCATACAGCTCGTTGCTTGATGATGTTGTGAGGGTGAGCTATGGCATCCACCTGATGCTTGTTTTTCCAATTGTTTTCTTCTCCCTTCGCCTCAACGTTGATGGTCTGCTGTTTCCCTGTGCCATACCTATTGCTTTCAATAACCGACGATTCTTCTCAATAACCGTAGCTCTCATGAGTTTCATCTTCATTGGAGCTAACTTTGTTCCCAGCATCTGGGATGCCTTTCAGCTCACTGGAGCCACTGCTGCCATCTCTGTTGGGTTCATATTTCCCGCCGCTCTCGTCCTCAGTATGGCTGCAATCTCCAGCGATATCTACAGTACTTACGTGGTCGAGAAACGCGCTTGA 1284 48.29 MTIIVAADRKYRRSPRKSLLPEKYDHQEPLEGLEGASFSGAVFNLSSTIVGAGIMALPAAVKQLGLIPGLIMIILGSTLTELSIDFILKFSRTSKSATYAGAVGDSLGSAGRTLLQVCIVVNNLGMLIVYMIIIGDVFSGTTTNNVHHKGVMEEWFGQHWWTSRISLMLFTTLLIFAPLISFKRVDSLRYTSSLSVGLAIVFVAITAGVSIAKLMDGSIGMPRLMPELIDQASFWQLFTTVPILVTAYICHHNVLPIENELKDPTQMKSIVRTSLIICSSLYIATSFFGFILFGDQTLDDVLANFDGDLGLPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNVDGLLFPCAIPIAFNNRRFFSITVALMSFIFIGANFVPSIWDAFQLTGATAAISVGFIFPAALVLSMAAISSDIYSTYVVEKRA 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1446089 1448872 - Carg21757-RA Car09g00264 154001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00264 427 Pfam Transmembrane amino acid transporter protein 36 410 IPR013057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00264 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - csv:101204458 731.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00264 Car-Chr9:1446089 Car14g01018 Car-Chr14:8625141 4.04E-180 dispersed
Car09g00264 Car-Chr9:1446089 Car04g00112 Car-Chr4:601803 3.90E-115 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g02476 CCT,ECH 89 445 Amino Acid/Auxin Permease AAAP Family AT5G02170 53.5 1.2e-99 360.9
Car06g00016 . 56 367 Amino Acid/Auxin Permease AAAP Family AT2G41190 55.6 3.8e-99 359.4
Car14g01018 . 3 458 Amino Acid/Auxin Permease AAAP Family AT3G30390 68.3 5.2e-172 601.3
Car09g00264 . 19 409 Amino Acid/Auxin Permease AAAP Family AT3G30390 60.4 1.2e-136 483.8
Car11g00858 . 37 428 Amino Acid/Auxin Permease AAAP Family AT3G28960 61.1 8.7e-139 490.7
Car14g01018 . 20 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 67.2 3.6e-165 578.6
Car09g00264 . 35 409 Amino Acid/Auxin Permease AAAP Family AT5G38820 59.4 1.1e-129 460.7
Car17g00822 CST 3 486 Amino Acid/Auxin Permease AAAP Family AT1G80510 72.2 2.4e-183 639.0
Car08g00516 CST 32 468 Amino Acid/Auxin Permease AAAP Family AT1G80510 71.5 4.2e-172 601.7
Car04g02476 CCT,ECH 75 474 Amino Acid/Auxin Permease AAAP Family AT5G02180 55.8 1.1e-120 431.0
Car04g02476 CCT,ECH 79 475 Amino Acid/Auxin Permease AAAP Family AT3G09330 53.0 1.5e-111 400.6
Car04g02476 CCT,ECH 79 475 Amino Acid/Auxin Permease AAAP Family AT3G09340 53.0 1.4e-112 404.1
Car04g02476 CCT,ECH 1 409 Amino Acid/Auxin Permease AAAP Family AT2G39130 67.2 1.5e-153 540.0
Car15g00433 . 1 507 Amino Acid/Auxin Permease AAAP Family AT2G39130 54.5 6.5e-144 508.1
Car04g01457 CCT,ECH 34 442 Amino Acid/Auxin Permease AAAP Family AT2G39130 62.8 1.9e-143 506.5
Car11g00858 . 94 427 Amino Acid/Auxin Permease AAAP Family AT5G15240 60.7 1.4e-110 396.7
Car04g01008 . 420 836 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.6 2.0e-133 473.0
Car04g00112 . 20 430 Amino Acid/Auxin Permease AAAP Family AT3G56200 60.2 3.2e-131 465.7
Car04g02476 CCT,ECH 1 439 Amino Acid/Auxin Permease AAAP Family AT3G54830 62.2 9.0e-147 517.7
Car15g00433 . 1 521 Amino Acid/Auxin Permease AAAP Family AT3G54830 51.2 2.5e-136 483.0
Car04g01457 CCT,ECH 29 454 Amino Acid/Auxin Permease AAAP Family AT3G54830 58.3 2.3e-134 476.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00264 Car_Chr09 FPKM 57.430943 74.704781 75.928764 71.962265 53.989246 56.178246 44.697716 83.309586 84.187592 85.082939