Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00270 ATGGATGCCGATTGTAACACGGGGCTTCTTCTAGGGCTGGGGCGGGGTTTGGATCATCATAATTCCATGCGCCCGCACGTACCGGATGTGGCTGGTGTTAAGAAGAAGCTTCAGGTTTTGAAATTTGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGGTTGTCGTCGAGAAGAGCGGCGGAGAATCCTCCGCTACCGCTGCGGAAGAGTTGATTCACCAGGGCTCTTCGGGTAGTCCGGTGTCGTCGTTTTCTAACTCATCGGGGTTTAAAAGGGAGCGAGACGGCGGCGCCGGTGAAGAGCCGGTTGAAGCGGAGGTGTTTATGGAGAGAATCTCTATGAAAGTTGCTGAAGAAGAGGAAGATGGAAGCCCGAGGAAGAAACTTAGACTCAGTAAAGAACAATCCGCCGTTTTAGAAGACAATTTCAAAGAACACTCCAGCCTCAGTCCTAAGCAAAAACAGGATTTGGCAAGACAGTTAAACCTAAGACCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACGGAAATGGACTGTGAATTACTGAAGAAATGCTGTGAAAAGCTCAAAGAAGAGAACACCAAGCTTCAAAAGGAACTTCAAGAGCTTAAATCCCTCAAATTAACTGCCCCGCCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACCGTTTGCCCTTCCTGTGAGAGCTCCATTTGCGGCGGCGGCGGCGGCGGCGGTGGCGGAGGAGGAGGCGCCGATGCTTCTCCAGCTAACACCTTCTCAATTGGGTCAAAGCCTCACTTTCTCAAATTCCCATTTAACCACCCATCGGCGGCTTGTTAA 855 50.06 MDADCNTGLLLGLGRGLDHHNSMRPHVPDVAGVKKKLQVLKFDDILPSLTLGLSVVVEKSGGESSATAAEELIHQGSSGSPVSSFSNSSGFKRERDGGAGEEPVEAEVFMERISMKVAEEEEDGSPRKKLRLSKEQSAVLEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTKLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCESSICGGGGGGGGGGGGADASPANTFSIGSKPHFLKFPFNHPSAAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1477720 1479140 + Carg21751-RA Car09g00270 154007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00270 284 MobiDBLite consensus disorder prediction 73 91 - -
Car09g00270 284 MobiDBLite consensus disorder prediction 73 103 - -
Car09g00270 284 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Car09g00270 284 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Car09g00270 284 Coils Coil 182 219 - -
Car09g00270 284 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Car09g00270 284 Pfam Homeobox associated leucine zipper 183 216 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00270 Car-Chr9:1477720 Car14g00376 Car-Chr14:1884739 6.08E-61 dispersed
Car03g00800 Car-Chr3:6593510 Car09g00270 Car-Chr9:1477720 6.19E-65 wgd
Car07g00543 Car-Chr7:2754898 Car09g00270 Car-Chr9:1477720 7.08E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4051 PF00046 Homeodomain 4.70E-17 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00270 K09338 - csv:101212868 330.487