Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00271 ATGGAGGAATATAATAATCATGTAAACGAAAACTCAAATCCGAGAGGGAATTTCTTGTACCCATCGGGAGTTGTTGGGGGGAATTCTTCATCGGGTAATTTCGGAAGGTCATCTAATCCGACGGCTCAGATGGGTCTCAATTCCTTTCATCTTCAACAAGGAGCCGACTGTTTTCAAACCGACCATTCCCACCCGATTGTCAAGACGGAAGCCAGTTCTTCACACCATCAGCTCCACAAATTTCACCACCCTTTACTCAGAGGAGGAGGAGGAGGGCAGCCGCCGCCGCCGCCGACGACATGTCGGCCTGACCAACACGGCTTACTCGATGTGGAAGCCATTAAGGCCAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTGGAAGCCTACATGGAATGTCAAAAGGTGGGTGCTCCGCCGCAAGTGGTGGAACGCCTGGTGGCGGCTCGGCATGAATTCGAAACACGGCAGCGATCTTCCATGGTTTCTGGAGAGACCATTAAGGATCCAGAACTTGACCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTACAAGGCCGATTCAAGAAGCCATGGATTTCATGCGACGGGTCGAATCTCAGCTCAGTTCTCTCTGCAACGGCCCTCTTCGGATCTTCAATTCCGACGAGAAGTGTGAGGGTATGGGATCGTCGGAGGAGGAACAAGAAAATAGCGGCGGAGAAACCGAGCTACCGGAGATCGACCCACGTGCCGAAGACAGAGAATTGAAGAACCACCTATTGAGAAAGTACAGTGGCTACTTGAGCAGTCTCAAGCAAGAACTTTCAAAGAAGAAGAAAAAGGGAAAGCTCCCAAAAGATGCAAGGCAGAAGCTTCTTAATTGGTGGGAGTTGCACTACAAATGGCCATACCCTTCAGAGACGGAGAAGGTGGCATTGGCTGAGTCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCCTCTGAAGATATGCAGTTCATGGTCATGGATGGGCTTCACCCTCCCAACACTGCTCTCTATATCGACGGTCACTACATGACCGATGCCCATTATCGACTCGGACCGTGA 1125 49.6 MEEYNNHVNENSNPRGNFLYPSGVVGGNSSSGNFGRSSNPTAQMGLNSFHLQQGADCFQTDHSHPIVKTEASSSHHQLHKFHHPLLRGGGGGQPPPPPTTCRPDQHGLLDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARHEFETRQRSSMVSGETIKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRVESQLSSLCNGPLRIFNSDEKCEGMGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNTALYIDGHYMTDAHYRLGP 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1479832 1482120 - Carg21750-RA Car09g00271 154008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00271 374 Pfam KNOX1 domain 113 155 IPR005540 GO:0003677|GO:0005634
Car09g00271 374 ProSiteProfiles 'Homeobox' domain profile. 276 339 IPR001356 GO:0003677
Car09g00271 374 Pfam KNOX2 domain 168 213 IPR005541 GO:0003677|GO:0005634
Car09g00271 374 MobiDBLite consensus disorder prediction 1 20 - -
Car09g00271 374 MobiDBLite consensus disorder prediction 68 101 - -
Car09g00271 374 Pfam ELK domain 256 277 IPR005539 GO:0003677
Car09g00271 374 ProSitePatterns 'Homeobox' domain signature. 314 337 IPR017970 GO:0000981|GO:0006355
Car09g00271 374 ProSiteProfiles ELK domain profile. 256 276 IPR005539 GO:0003677
Car09g00271 374 MobiDBLite consensus disorder prediction 223 251 - -
Car09g00271 374 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car09g00271 Car12g00568 CCT
Car01g01369 Car09g00271 CCT
Car05g00098 Car09g00271 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00507 Car-Chr3:5161523 Car09g00271 Car-Chr9:1479832 1.13E-76 dispersed
Car05g00025 Car-Chr5:135513 Car09g00271 Car-Chr9:1479832 7.22E-74 dispersed
Car07g00281 Car-Chr7:1472443 Car09g00271 Car-Chr9:1479832 8.05E-75 dispersed
Car09g00271 Car-Chr9:1479832 Car11g01493 Car-Chr11:12047728 9.54E-83 dispersed
Car12g00981 Car-Chr12:9897209 Car09g00271 Car-Chr9:1479832 1.37E-64 dispersed
Car01g01369 Car-Chr1:12038100 Car09g00271 Car-Chr9:1479832 0 wgd
Car12g00568 Car-Chr12:3802660 Car09g00271 Car-Chr9:1479832 2.72E-127 wgd
Car05g00098 Car-Chr5:503872 Car09g00271 Car-Chr9:1479832 8.34E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4052 PF03791 KNOX2 4.20E-25 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00271 - - csv:101213104 606.29