Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car09g00274 | ATGATCGGCGAACAATCTAGATTCACTCATACCATTCAAGTTCCCCCTTGGGACCCACACGAAGACCACCATACAATCGGAATTTCCTCGCCGGTCTTCATTCCCGGTGGCCTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCGTTATCTACCCTCGGCGGCGGATTCCACCGCGGCGGAAGAAGCGGTGGATGGATTTTCCTGCGACCATTTCCGTATGTTCGAGTTCAAAATCCGGAGATGTGCACGTGGGAGATCGCACGATTGGACAGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCACGCCGACGAGATCCGAGGAAGTATCATTACTCCGGCACGGCCTGTCCCGAGTTTCGGAAAGGAAATTGCAAAAAAGGGGATTCTTGCGATCTCGCTCATGGGATTTTCGAGTGTTGGCTCCATCCAGCTCGGTATAGGACTCAGCCTTGTAAAGACGGACTGGCCTGCCGCCGCCGTGTCTGTTTTTTCGCCCATTTGCCGGAACAGCTCCGGGTTCTGCCACAGCAGAGCCCGAGAACTCCGGTTTCGGCCGATTCAGTAGATGGGTCCCCTCGAATTTCACTCGCATTCGATTCCTATTTCGCCAAAGGCTCACTTGTGACCTCACCCACTTCAATTATATCAATGCCGCCGGTCTCTCCACCGTCGGATTCTCCCCCTCTGTCGCCGAATTGTCCCCAACTCGGCGGTGGGTCATTCAATTCAATGACTAAATTGGCTTCGTCTCATCTTAAAATAGGGAAATCAAAGGCAACCCCTCATTGGGGGATTCAATTAGGACAAAATCTGCTCTCTCCCTCCGGCTCTGGTTTCTACAGTCTACCGTCAACTCCGACGACCGGAAAGTACGAATTGTGGGGGAAGAATTACGAGGAAGAACCCGCAATGGAGAGAGTGGAATCAGGGAGAGACCTGAGAGCCAAAATGTACGCAAAACTCAGCAAAGACAACTCGGTGAAAGAGGCGGCGGATTCGACGTCGACACCCGATGTCGGATGGGTCTCGGAGCTATTAATGTAA | 1050 | 52.95 | MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTAAEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQLGGGSFNSMTKLASSHLKIGKSKATPHWGIQLGQNLLSPSGSGFYSLPSTPTTGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEAADSTSTPDVGWVSELLM | 349 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1495919 | 1496968 | + | Carg21747-RA | Car09g00274 | 154011 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car09g00274 | 349 | ProSiteProfiles | Zinc finger C3H1-type profile. | 113 | 139 | IPR000571 | GO:0046872 | |
| Car09g00274 | 349 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00097 | Car09g00274 | CCT | |
| Car01g01366 | Car09g00274 | CCT | |
| Car05g00097 | Car09g00274 | ECH | |
| Car01g01366 | Car09g00274 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car09g00274 | Car-Chr9:1495919 | Car12g01256 | Car-Chr12:11829776 | 1.56E-104 | dispersed | |
| Car01g01366 | Car-Chr1:12022257 | Car09g00274 | Car-Chr9:1495919 | 1.16E-174 | wgd | |
| Car10g00622 | Car-Chr10:3158837 | Car09g00274 | Car-Chr9:1495919 | 2.56E-108 | wgd | |
| Car11g00553 | Car-Chr11:2977852 | Car09g00274 | Car-Chr9:1495919 | 1.79E-107 | wgd | |
| Car12g00569 | Car-Chr12:3813502 | Car09g00274 | Car-Chr9:1495919 | 4.27E-88 | wgd | |
| Car05g00097 | Car-Chr5:498875 | Car09g00274 | Car-Chr9:1495919 | 8.01E-85 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4053 | None | None | None | None | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car09g00274 | - | - | cpep:111797621 | 700.279 |