Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00301 ATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCAACGATGA 378 43.12 MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNQR 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1682880 1684154 - Carg02780-RA Car09g00301 154038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00301 125 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 103 IPR000504 GO:0003723
Car09g00301 125 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 116 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00301 - - - cmos:111442922 246.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01335 Car09g00301 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00301 Car-Chr9:1682880 Car15g00561 Car-Chr15:3114687 4.25E-30 dispersed
Car01g01335 Car-Chr1:11884422 Car09g00301 Car-Chr9:1682880 1.73E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g115 Blo01g01458 Blo12g01020 Bda01g00629 Bda03g00137 . Bpe02g00497 Bma04g00121 Bma01g02207 . . Cma01g01720 . Car09g00301 . . . Cpe06g00249 . . . . . . . Cla05g01849 Cam05g1973 Cec05g1986 Cco05g2045 Clacu05g1966 Cmu05g1847 Cre05g1971 Cone4ag1677 Cone7ag1275 . . Lsi04g01410 . . . . . . . . Bpe04g00119 . . . . Cmo09g00353 Cma09g00353 . Car01g01335 . . . Bhi09g03127 . . . . . . . . . . . . . . . . Cme07g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004655 2 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00301 Car_Chr09 FPKM 9.113122 10.091099 9.397107 8.663127 18.244764 16.075808 16.426069 6.116626 6.018427 6.349282