Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00303 ATGGGGCGCGTTAACCCCAGAACCAAGCCATCGGTGGCGGGAACTGCCGGTAAATCAGAAAGTCGGCGGATGAGCAACGCGGACCGTTCGGCATACTTCGCTAGGAGAGAGGCGGCGAAGATATTGCGGCGTGTTCTTGAGGGTGATGCTCACCGTCGAGCCGTCGCCTCCATTAAGTCACTCGTTTATGCTCCGTCTGTTCGGAATAAGAAGGGTACATTCGCTCTTGTTTGCAAGACTCTCAAGTACCTCCCTGTAATCAAGGAAGTACTGGAGGCTGCTGATTTATTGAGCAACAAGTGGAAGAGGCAGAAGGAATTAATTTACGTCATCATGTATGATATCCTCCTAGGCCAGAAAACCCCTTTAGCTGGCGATGCAGAGAAGTTTCTTATGCGGCAGCAAAGCGCTTTACAATCTGTGGTTACACAGCTTTTGTCAAAGAGAAAAGCAAATAATATTGAAGATTTAATAGCTCGTGGTGATAATCCTGGTGTTTCAAGGCCTCGTTTTATCCGTGTGAATACTTTGAAGATGGATGTTCACACAGCAATACAAGAATTAGGCAAAAGATATGCAGTTCAGAAGGATGACATGGTTCCTGACCTCTTGGTACTTCCTCCAGGCAGCGATTTACATGATCATCCATTGGTTGCAGATGGGAGTATCTTCATGCAAGGGAAGGCTAGTTCTATGGTTGCAGTAGCCCTTGATCCCAAGCCAGGATGGGAAGTCCTTGATGCATGTTCAGCTCCGGGTAACAAAACTGTCCACCTTGCCTCTCTCATGAACGGAAAAGGAAGGATCATTGCATGTGAATTGAACGAAAACAGGGTCAAACGCTTACAACATACAATCAAACTATCGGGAGCTTCTAAAGTTTTGCATGGGGATTTCCTTGCTCTTGATCCAAAAGATCCTTCGTTGTCCAAAGTAAGTTCTGCTCCGATCCGCACTGATCATCTTTTGTTCAGTTACCACCCTCCTGTTCTTTTAAACGGTGGCTTCTCTGATGTGGTCCGTGCCATTCTTTTGGATCCTTCCTGCTCTGGCTCTGGAACTGCAGCTGTTAGATTAGATCATTTGCTCCCGTCACATGTTGAAGGGAAGAGCTCTGGGGATGACCATGAACGACTGGACAAACTCGCTGCCTTTCAGAGGAAGGCTCTAGCTCATGCATTTTCCTTTCCGGCCGTAGAGAGAATTGTTTACAGCACTTGTTCTGTTCATCAAGTTGAAAACGAAGATGTTGTCCACTCATTATTACCTCTGGCTGAATCGCATGGCTTTCAACTGGAAACTCCGTTCCCACAGTGGCAGCGGCGAGGTCACCCAGTTTTCGCCGGCGCTAACCATTTACTTCGAACCGACCCCCTCGAAGACAAAGAAGGATTCTTCATAGCACTATTTAAGAAGCAGAACACGACGCACCCATTTCCCCAAATTTCTAGTAGAGATAAAAGCTCTAGAAATAATGGTGTAAACGTCAGAAACCGGGCAGTTGCAGGCCTTCCTACCACCATGTTCAAAATGTGGCTGTATGCACATTCAAGGAGGACACGACGGAGAAAAACCTCCAAAACTAGAACAAGATCTTGA 1599 46.72 MGRVNPRTKPSVAGTAGKSESRRMSNADRSAYFARREAAKILRRVLEGDAHRRAVASIKSLVYAPSVRNKKGTFALVCKTLKYLPVIKEVLEAADLLSNKWKRQKELIYVIMYDILLGQKTPLAGDAEKFLMRQQSALQSVVTQLLSKRKANNIEDLIARGDNPGVSRPRFIRVNTLKMDVHTAIQELGKRYAVQKDDMVPDLLVLPPGSDLHDHPLVADGSIFMQGKASSMVAVALDPKPGWEVLDACSAPGNKTVHLASLMNGKGRIIACELNENRVKRLQHTIKLSGASKVLHGDFLALDPKDPSLSKVSSAPIRTDHLLFSYHPPVLLNGGFSDVVRAILLDPSCSGSGTAAVRLDHLLPSHVEGKSSGDDHERLDKLAAFQRKALAHAFSFPAVERIVYSTCSVHQVENEDVVHSLLPLAESHGFQLETPFPQWQRRGHPVFAGANHLLRTDPLEDKEGFFIALFKKQNTTHPFPQISSRDKSSRNNGVNVRNRAVAGLPTTMFKMWLYAHSRRTRRRKTSKTRTRS 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1686177 1691111 + Carg02782-RA Car09g00303 154040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00303 532 MobiDBLite consensus disorder prediction 1 28 - -
Car09g00303 532 Pfam 16S rRNA methyltransferase RsmB/F 235 471 IPR001678 GO:0008168
Car09g00303 532 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 160 473 IPR001678 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00303 K15264 NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311] - csv:101212715 814.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00303 Car-Chr9:1686177 Car09g00924 Car-Chr9:5690978 5.39E-12 dispersed
Car09g00303 Car-Chr9:1686177 Car01g00941 Car-Chr1:9071635 3.46E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g124 Blo01g01455 . . . . . . Bma01g02203 . . . . Car09g00303 . . . Cpe06g00251 . . . . . . . Cla05g01855 Cam05g1978 Cec05g1991 Cco05g2049 Clacu05g1970 Cmu05g1852 Cre05g1977 . Cone7ag1601 . . Lsi04g01403 . . . . . . . . . . . . . Cmo09g00354 Cma09g00354 . . . . Cpe02g00278 Bhi09g03108 . . . Hepe01g1904 Mch11g0437 . . . . . . . . . . . Cme07g00198
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008710 0 4 1 1 0 1 1 1 1 1 1 1 2 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00303 Car_Chr09 FPKM 5.307329 6.414901 5.916188 7.908329 6.605021 6.087874 6.785759 4.321109 4.030218 4.475174