Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00315 ATGGCGGCCGATTTAGCGCGGCTCTCTCTATGGCCTCACCAGAGGCAGTTCTTTCACTCCGCCTCTAAATCTCAGGCTTCTTTGTTTGAGTCTAGGCCTGGATTTCTCCCCATACGGCATCGACCTCAGAGTTTGGTACGGAAACAGTATCCACGTCGTTTTGGAAGATGCTTGGGGCATCGTTTCGTTGTTTCGAATACTCTTGAGGCCGAACTTCGAGCTCAGAACACGGTGCTTCAACAGGAGCGGCGGGATGAGTCTTCTGTTCTTCTTGATGTCTCTGGAATGATGTGTGGTGCATGCGTCTCCCGAGTCAAATCCATTCTCTCGTCCGACGACCGAGTTGACTCTGTGGTGGTTAATATGTTGACTGAGACAGCGGCGATTCGGTTGAAATCGGATGAAGTTGGCGCGGAGGCTGGTTCTGCGGTGAATGTGGCGGAGAGTCTGGCGCGAAGACTGACGGATTGTGGCTTTCCGACGGTTTTGAGGAATTCGGAGGTCGGAGTGGCGGAGAATGTGAGAAAATGGAAGGAGATGGTTGAGAAGAAAAGAAAAATGCTGGTTAAGAGTAGGAATCGAGTGGCTATTGCTTGGACTTTGGTTGCCTTATGCTGTGGCTCACACGCATCGCATATCTTGCACACTTTCGGGATTCACATCCACCACGGACCAGTGATGGAGATACTTCATAACTCGTATGCGAAGGGTTGTTTTGCTTTGGTTGCTCTTTTAGGACCAGGACGAGAACTACTCTTTGACGGTCTGAGGGCATTCAGGAAGGGATCACCTAATATGAACTCTCTTGTGGGTTTTGGAGCTGTTGCTGCATTTATTATCAGTGCGGTCTCACTTCTTAATCCTGAGCTAGACTGGGATGCCTCATTTTTTGATGAGCCGTGCAATTCCTTTTTTAGTGAGCAGGTCATGCTTCTTGGTTTTGTGCTTCTTGGGCGCTCTCTGGAGGAAAGAGCAAGGGTTAAGGCCTCTAGTGATATGAATGAGCTTTTATCGTTGATCTCTTCCCATTCACGACTTGTGATTACTCCATCAGAAGGCAAGTCCTCTACAGATGATGTGCTTTGCTCGGATGCAATGTGCATTCAGGTGTCTACCGATGACATTCGGGTTGGAGACTCGGTTTTAGTTTTGCCTGGAGAGACTATTCCCGTGGATGGAAAGGTTCTTGCGGGAAGAAGTGTTGTAGATGAATCAATGCTTACTGGGGAATCTCTACCTGTATTTAAGGAAGCAGGCCTTATCGTCTCAGCTGGAACTGTGAACTGGGATGGCCCTTTGAGAATTGAAGCGTCTTCTACTGGCTTGAACTCAACAATCTCCAAGATCGTGAGAATGGTTGAGGATGCGCAAGGCCATGAAGCTCCAATACAAAGGCTTGCCGATTCCATAGCTGGGCCATTTGTGTACACTGTATTAACTCTCTCAGCGGCAACATTTGCATTTTGGTACTGCTTTGGTACCCATATCTTTCCTGATGTTTTGATCAATGATATTGCTGGACCAGATGGAGACCCCTTGCTTTTGAGCTTGAAACTTTCAGTTGATGTCTTGGTAGTTTCTTGTCCATGTGCACTTGGACTAGCCACTCCCACAGCAATTCTAGTTGGCACCTCCCTTGGGGCTCGACGAGGACTTCTAATAAGAGGAGGAGATGTATTGGAACGCCTGGCAGGCATAGATTGTGTTGCTTTGGACAAGACAGGAACTCTTACTGAAGGAAAGCCTACAGTTTCTTCTGTGGTTTCGTTTGTTTATGGAGAAGCAGAAATACTTCAAGTTGCTGCTGCGGTGGAGAAAACTGCTTCACATCCCATTGCAAGAGCTATCATAGATAAAGCAGAATCTTTGAATTTGACCATTCCAGGCACAACAGGGCAGTTGGTAGAACCTGGCTTCGGATCTTTTGCCAATGTAAATGGGCGACTAGTTGCAGTCGGTTCATTAGAATGGGTTAGTGATCGATTTGAGCAAAAAGCAAGTACCTCTGATCTTAAGAATCTCGAGCATTCTGTGTTTCAGTCATTAGAGTGGATATCATCTTCAAATAATTCAAAAACAGTTGTTTACGTTGGGCGCGAAGGAGAGGGCATCATTGGTGCTATTGTAATATCTGATCGGTTGCGCTATGATGCTGAATCCACTGTTAATAGGCTCCAGAAGAAGGGAATCAGAACGGTCCTCTTATCTGGAGACAGGGAAGAGGCAGTTGCAAGTGTAGCCAAGTCAGTTGGAATAGAAAAGGAATTTGTTCACTCATCTTTGACTCCTCAAAACAAATCTGACCTTATTTCCACTCTGAAAACTGCTGGACATCGAGTTGCTATGGTTGGTGATGGCATAAATGATGCACCATCTTTGGCTTCTTCCGATGTTGGGATCGCTCTGCAGCTTGAAGCACATGAAAATGCTGCTTCGAATGCCGCATCCATTTTACTTCTTGGAAATAGAATATCTCAGCTTGTTGACGCAATGGAACTTGCACAAGCAACAATGTCTAAGGTGTACCAAAATTTGTCGTGGGCAATAGCTTACAATGCCGTTGCCATTCCAATTGCTGCTGGGGTTCTGCTCCCAGGATTTGACTTTGCAATGACTCCTTCCCTTTCAGGTGGTCTTATGGCTTTAAGTTCAATATTCGTCGTCACCAACTCATTACTTCTGCAGATCCATGCCCCCAAAGAACCTCAAAAATCTACCTGA 2721 46.34 MAADLARLSLWPHQRQFFHSASKSQASLFESRPGFLPIRHRPQSLVRKQYPRRFGRCLGHRFVVSNTLEAELRAQNTVLQQERRDESSVLLDVSGMMCGACVSRVKSILSSDDRVDSVVVNMLTETAAIRLKSDEVGAEAGSAVNVAESLARRLTDCGFPTVLRNSEVGVAENVRKWKEMVEKKRKMLVKSRNRVAIAWTLVALCCGSHASHILHTFGIHIHHGPVMEILHNSYAKGCFALVALLGPGRELLFDGLRAFRKGSPNMNSLVGFGAVAAFIISAVSLLNPELDWDASFFDEPCNSFFSEQVMLLGFVLLGRSLEERARVKASSDMNELLSLISSHSRLVITPSEGKSSTDDVLCSDAMCIQVSTDDIRVGDSVLVLPGETIPVDGKVLAGRSVVDESMLTGESLPVFKEAGLIVSAGTVNWDGPLRIEASSTGLNSTISKIVRMVEDAQGHEAPIQRLADSIAGPFVYTVLTLSAATFAFWYCFGTHIFPDVLINDIAGPDGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARRGLLIRGGDVLERLAGIDCVALDKTGTLTEGKPTVSSVVSFVYGEAEILQVAAAVEKTASHPIARAIIDKAESLNLTIPGTTGQLVEPGFGSFANVNGRLVAVGSLEWVSDRFEQKASTSDLKNLEHSVFQSLEWISSSNNSKTVVYVGREGEGIIGAIVISDRLRYDAESTVNRLQKKGIRTVLLSGDREEAVASVAKSVGIEKEFVHSSLTPQNKSDLISTLKTAGHRVAMVGDGINDAPSLASSDVGIALQLEAHENAASNAASILLLGNRISQLVDAMELAQATMSKVYQNLSWAIAYNAVAIPIAAGVLLPGFDFAMTPSLSGGLMALSSIFVVTNSLLLQIHAPKEPQKST 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1740732 1750364 + Carg02794-RA Car09g00315 154052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00315 906 Coils Coil 65 85 - -
Car09g00315 906 Pfam haloacid dehalogenase-like hydrolase 566 796 - -
Car09g00315 906 Pfam E1-E2 ATPase 363 550 - -
Car09g00315 906 ProSiteProfiles Heavy-metal-associated domain profile. 88 163 IPR006121 GO:0046872
Car09g00315 906 Pfam Heavy-metal-associated domain 91 136 IPR006121 GO:0046872
Car09g00315 906 ProSitePatterns E1-E2 ATPases phosphorylation site. 572 578 IPR018303 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00315 K17686 copA, ctpA, ATP7; P-type Cu+ transporter [EC:7.2.2.8] - csv:101214637 1542.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00660 Car09g00315 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00315 Car-Chr9:1740732 Car15g00097 Car-Chr15:568053 8.06E-90 dispersed
Car11g01187 Car-Chr11:9631332 Car09g00315 Car-Chr9:1740732 5.38E-08 dispersed
Car09g00315 Car-Chr9:1740732 Car16g00223 Car-Chr16:1245878 3.58E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g165 Blo01g01443 . Bda01g00641 . . Bpe02g00510 . . . . . . Car09g00315 . . . Cpe06g00260 . . . . . . . Cla05g01629 Cam05g1738 Cec05g1746 Cco05g1803 Clacu05g1729 Cmu05g1614 Cre05g1742 . . Cone17ag0948 . Lsi04g01385 . . . . . . . . . . . . . Cmo09g00365 Cma09g00366 . . Car05g00660 . . Bhi09g03080 . . . . . . . . . . . . . . . . Cme07g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010516 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00315 Car_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.041143 0.295044 0.0