Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00316 ATGTGGTGGGGTGAAGGGGGCGGGCTTTGGCTGAGTGATGTTGCAGAGATTGTTACAGAGTTCTGGCAGAGATGGAAACGGGTTTTGAAGATTCTTGCTACTACCCAGCCATGGAAGCTGCAGCAATGGTGTAAAGCGAAGCCTGGGAAGACGGCAGCCATGGCATTCCCCGTCGAGCTCGTTATTCTGGGTTTTCTCTTCTGTGCTACCGTCGGCGTGGTGAACTCCGATGATGGAGCATCATTGTTGGACATAAAGAAATCATTCAGGGATGTTGATAATGTTCTATATGATTGGACAAGCTCACCTTCATCAGACTACTGTATATGGAGAGGTGTCACCTGCGACAATGACACTCTCAATGTCATATCTCTTAATCTTTCAGGCCTCAATCTTGATGGGGAAATTTCTCCTTCTGTCGGCAACCTCAAGGGCCTGCAAACCTTGGATTTGAGGGGGAATAGCCTTTCTGGACAAATCCCAGATGAGATTGGTGACTGTTCTTCATTAACAAATCTGGACTTATCGTTTAATGAGATATATGGAGACATACCCTTTTCCATATCGAAATTGAAGCAGCTGGAAATGCTTGTTCTGAAGAACAATCGACTCATTGGGCCGATCCCATCGACGTTATCTCAGATTCCAAACTTGAAGGTTTTAGATCTAGCACAGAACAATCTCAGCGGGGAAATCCCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTCTGCGCGGCAACAATTTGGTGGGCGCGCTGTCTCCAGATATGTGTCAGCTCACTGGCTTATGGTATTTTGATGTGAGAAACAACAGTTTAACAGGCAGCATACCTCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTAGACCTGTCGTATAATCATCTCACTGGAGAGATACCGTTCAACATTGGTTTTCTTCAAGTTGCCACGTTGTCCCTGCAGGGTAATCAGCTATCAGGTCCCATCCCACCGGTAATCGGTCTGATGCAGGCGCTTGCCGTGCTAGATTTGAGCTGCAACATGTTATCTGGTCCAATCCCTTCTATCTTAGGGAATTTGACTTATACTGAGAAACTGTACTTGCATAGCAACAAACTCACCGGGTCCATCCCGGCAGAGCTCGGGAATATGACAAAGCTCCATTATCTGGAACTGAATGATAATCGTCTTACTGGGAATATTCCAGCCGAGCTCGGGAAACTCACCGATTTGTTCGATCTAAACGTTGCTAATAACAATCTTGAAGGTCCTATCCCTGATAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATGTTCATGGCAACAAGTTGAATGGAACTATCCCACCGTCTTTCGAGAAGCTAGAGAGTATGACGTACTTGAATCTCTCCTCTAATGTTCTACGAGGTCCTATTCCAGTCGAGCTATCTCGCATTGGCAATCTCGATACGCTAGACATCTCAAATAACAAAATTAGCAGCACGATTTCTTCATCGTTTGGCGATCTCGAACATCTCCTAAAGCTGAATTTAAGTAGGAATCAATTAACGGGGTCTATTCCAGCTGAATTTGGCAATCTAAGGAGTGTAATGCAAATAGATATTTCACACAATCAGCTCTCTGGGATCATTCCTCAAGAACTGAGTCAACTTCAAAATCTGTTCTCCTTGAGACTTGAAAACAACAATTTATCGGGGGACGTGACGTCGCTGATTAGCTGCCTAAGCCTTACCGAATTAAACGTATCTTACAACAATCTGAATGGTGATATTCCCACAAGCAACAACTTTTCTAGGTTCTCGTCTGACAGTTTTCTTGGAAATCTTGCTCTATGTGGATATTGGAATAGCAACAACTATCCCTGTCATGTGGCTCAGGCGACAGAGCGAGTGACAATATCTAAAGCTGTTATCCTGGGAATTGCTCTTGGTGTCATTGCGATCCTTCTGATGATCCTTCTAACAGTGTGCCGTCCAAACAACACAATACCTTTTCCAGATGGATCACTTGATAAACCAGTTACTTACTCAACTCCCAAGCTAGTGATGCTTCACATGAACATGGCACTTCACGTGTATGAGGATATTATGAGGATGACTGAAAATTTGAGTGAAAAGTACATTATTGGATATGGAGCTTCAAGCACAGTCTACAAATGTGTACTCAAGAACTGCAAACCTGTGGCTATCAAGAAGCTCTACTCTCACCAGCCACATAGCATGAAGGGATTCGAGACCGAACTCCAAACCGTGGGTAGCATCAAGCACAGAAATCTGGTCAGCCTCCAAGGATATTCCTTATCTCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAACGGCAGTCTTTGGGATCATCTGCATTGCTCTAGCTCTACCAGGAAGAAAAAGCTGGACTGGGACACTCGGCTCAATATTGCACATGGAGCAGCTCAAGGGCTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTCAAGTCATCAAACATTCTGCTAGACAAGGATTTTGAAGCTCATCTCACTGATTTCGGTATTGCCAAGAGTTTATGTACCTCGAAGACTTATACGTCCACTTACATCATGGGAACTATTGGATACATTGATCCGGAGTATGCTCGTACTTCTCGACTTACTGAAAAGTCCGATGTTTACAGCTTTGGCATTGTGTTGCTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAGCAGCCAACAATGCTGTAATGGAGACAGTTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCGTTTCAGCTTGCTCTGCTTTGCACCAAGAGGCAGCCATCCGATCGACCGACGATGCACGAAGTAACGCGCGTCATTGAGAGTCTTCTGCCCTCTGCCACAGTGCCAAAACAAACACCAACCATGCCCCCATCTGCAAAATCCCCTTGCTACAGGGACGAGTATACAAATCTGAAAACACCGCACGTGCTGAACTGCCCATCCATGAGCACGTCAGATGCCCAGCTTTTCCTCAAGTTTGGAGAGGTTATATCACAAAACAGTGAGTAA 3102 44.71 MWWGEGGGLWLSDVAEIVTEFWQRWKRVLKILATTQPWKLQQWCKAKPGKTAAMAFPVELVILGFLFCATVGVVNSDDGASLLDIKKSFRDVDNVLYDWTSSPSSDYCIWRGVTCDNDTLNVISLNLSGLNLDGEISPSVGNLKGLQTLDLRGNSLSGQIPDEIGDCSSLTNLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGALSPDMCQLTGLWYFDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLSGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNRLTGNIPAELGKLTDLFDLNVANNNLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFEKLESMTYLNLSSNVLRGPIPVELSRIGNLDTLDISNNKISSTISSSFGDLEHLLKLNLSRNQLTGSIPAEFGNLRSVMQIDISHNQLSGIIPQELSQLQNLFSLRLENNNLSGDVTSLISCLSLTELNVSYNNLNGDIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHVAQATERVTISKAVILGIALGVIAILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVMLHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHQPHSMKGFETELQTVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHCSSSTRKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKAANNAVMETVDPEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIESLLPSATVPKQTPTMPPSAKSPCYRDEYTNLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1754183 1760698 + Carg02795-RA Car09g00316 154053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00316 1033 Pfam Protein kinase domain 705 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00316 1033 Pfam Leucine rich repeat 480 539 IPR001611 GO:0005515
Car09g00316 1033 Pfam Leucine rich repeat 336 395 IPR001611 GO:0005515
Car09g00316 1033 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515
Car09g00316 1033 Pfam Leucine rich repeat N-terminal domain 76 116 IPR013210 -
Car09g00316 1033 Pfam Leucine Rich repeat 572 589 IPR001611 GO:0005515
Car09g00316 1033 ProSiteProfiles Leucine-rich repeat profile. 217 239 IPR001611 GO:0005515
Car09g00316 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Car09g00316 1033 ProSitePatterns Protein kinases ATP-binding region signature. 708 731 IPR017441 GO:0005524
Car09g00316 1033 ProSiteProfiles Protein kinase domain profile. 702 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00316 Car-Chr9:1754183 Car16g00765 Car-Chr16:4852458 2.25E-171 dispersed
Car02g00793 Car-Chr2:5775093 Car09g00316 Car-Chr9:1754183 0 transposed
Car19g00275 Car-Chr19:3435518 Car09g00316 Car-Chr9:1754183 1.33E-20 transposed
Car19g00276 Car-Chr19:3435855 Car09g00316 Car-Chr9:1754183 0 transposed
Car01g01317 Car-Chr1:11782459 Car09g00316 Car-Chr9:1754183 6.43E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89078 PF00069 Pkinase 6.70E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00316 K20718 - csv:101214398 1815.43