Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00318 ATGGAACACAGCAGAAAGACAGGACAGCTCAGTCTACAGTGGACGGTCCACGGTCGTCGGTCCACAGTCCACAGACCAGAGCACATCAGTCATGGAGAAGAAAACCAGACGCAGAGAGCAGAAAGAAAAATATATGTTGCGGCGCTTCGATTCCGCCACCCTTTGCGACGGTCCTCTTTTGAAGCAGATCTTTACTTTGAGGTCGGATTTCACTGTTGCTGCCTCGTGGGGATTCTTCAATTTGATCCAACAGCTGGCTTTGAGGATTTCAATATGAGCGAGCATTTTCGAAGGCAATTGGAAGTTCATTTGATTGCGATGAATCTTTGTTGTTCTATGCGGTCTCATTTGAGTAGAAATATGGGTTTACTCTGCAGCAGAAGTCGTCACTACAATGAACAAGATTCTGAAGAGAATGCGCAGGCAAGCCCGTTTATTCTTTACGGTCGTAATCCGCAAGGCCGTAACGAAGTTGGTTCACTAACATTTCTTGAGTTGTTGCTCCATTTTTTTCAGATAAAGTTGTTGTTCCAAACTGGCTTTGATGAGACAGAGCTAAAGAGCTACATTCCAGTCATTCATGCAAATGTGTATCAGACTATAAAAGTATTACATGACGGTTCGAAGGAGCTCGCTCAAAATGATAAAGAGTTCTCGAAGTATGTTTTATCCAATGAAAATAAGGAGGACGTCCTCTACGCAAGAGTTCGTACGACCGGTGTTGTTGAAATTCAATTTAGTCCCGTTGGAGAAAATAAAAAGAGCGGCGAAGTGTATAGACTCTTTGATGTTGGTGGTCAGAGAAACGAGAGGCGAAAATGGATTCATCTTTTTGAAGGTGTTACAGCAGTAATCTTTTGTGCTGCTATTAGTGAGTATGATCAAACACTTTTTGAGGATGAACAGAAGAATCGAATGATGGAGACCAAGGAACTTTTCGAGTGGGTTCTGAAACAAGAGTGTTTTGAGAATACGTCATTTATGCTTTTTCTTAACAAGTTCGATATCTTCGAGAAAAAGGTTCTAAACGTCCCTCTCAGTGTATGTGAATGGTTCAACGATTATCAGCCGGTTTCGACTGGAAAACAAGAGATCGAGCATGCCTATGAGTTCGTGAAGAAAAAATTCGAGGAGTTGTATTTTAAGAGCACGGCACCAGATCGAGTAGACCGGGTGTTTAAGGTATACAGAACAACTGCTCTCGATCAGAAACTTGTAAAGAAGACGTTCAAGCTCGTAGATGAAACATTGAGGCGGCGAAATCTGTTCGAGGCCGGGGCCAGCAGATCATCAGATGTAATAGCTGATCCATTGGCGTTGAATTTGCCACGATACTGTGATAACATCCCAGCTCGAGTACACAGCCTTAAAATTCATTGTCCTCCGACATTATTCTACTCGATTCGTTGTGAACCACAGCTGCAGGTATTGGTGGTAGAGATCTCCACGTGTAGAGATGCAGGAATCGGAAAGATGCGGGTTCGGCGGGTTGATCAACCCTCTGGATTCTCGCCGGAGGATTTGGGTTATGGATCTATGTTTGAGAGGTTGGAGACTGGGGATGTGGATCGCGGTGTTGAAGGGTTTGAAAAGGAGGCTGAGGAATCTAATACTTGTAGCTCAGCTTCAACTTCTTCGTCTTCTTCCATCGGGAGGAATAGTGATCAGTCCGCGAGATCGTCGGATGATGAGGATAGCGGCGAGAATGATGAGGTTCAGAGCTCCTATAAAGGGCCGCTGGATATGATGGACTCCTTGGAGGAGGTTTTGCCTGTCAGAAAAGGTATCTCAAAGTTCTACAATGGAAAATCGAAGTCTTTCACGAGTTTGGCCGATGCGTCCACTGTTTCCTCAGTGGAGGAGATTGTGAAGCCAGAAAATGCCTATTCCAAGAAACGTAGGAATCTTATGGCTTTCAATCTGGTGTGGGAGAAGAACCGGAGTTTCCCCCTCAAGAATAACGGTGGTGGGATATCAAAGAGACCCATCAGCTCAAGCAGAAGCTCCTTCGCTTTGGCCGTTGCTATGAGCAGCTCCGAAAGTAACAGCAGTGAGGACTCAAATTGTAGCTCATATTCAAGCTCTCCACCGCCTCGCCCACCTCTGCACCCACAATCCAAAGCGTCCAACAGCAATCTGGCTTCCATTGTGCCACCACAACGAAATTTCTCCACTTGGCGTTCATATTCCTTGGCTGATCTACAAGAGTGTGCCACCTCTGCTAATAAGGCCAACCTAACAAATCTAAACTGA 2253 45.1 MEHSRKTGQLSLQWTVHGRRSTVHRPEHISHGEENQTQRAERKIYVAALRFRHPLRRSSFEADLYFEVGFHCCCLVGILQFDPTAGFEDFNMSEHFRRQLEVHLIAMNLCCSMRSHLSRNMGLLCSRSRHYNEQDSEENAQASPFILYGRNPQGRNEVGSLTFLELLLHFFQIKLLFQTGFDETELKSYIPVIHANVYQTIKVLHDGSKELAQNDKEFSKYVLSNENKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFEWVLKQECFENTSFMLFLNKFDIFEKKVLNVPLSVCEWFNDYQPVSTGKQEIEHAYEFVKKKFEELYFKSTAPDRVDRVFKVYRTTALDQKLVKKTFKLVDETLRRRNLFEAGASRSSDVIADPLALNLPRYCDNIPARVHSLKIHCPPTLFYSIRCEPQLQVLVVEISTCRDAGIGKMRVRRVDQPSGFSPEDLGYGSMFERLETGDVDRGVEGFEKEAEESNTCSSASTSSSSSIGRNSDQSARSSDDEDSGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYNGKSKSFTSLADASTVSSVEEIVKPENAYSKKRRNLMAFNLVWEKNRSFPLKNNGGGISKRPISSSRSSFALAVAMSSSESNSSEDSNCSSYSSSPPPRPPLHPQSKASNSNLASIVPPQRNFSTWRSYSLADLQECATSANKANLTNLN 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1761810 1772691 - Carg02797-RA Car09g00318 154055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00318 750 Pfam G-protein alpha subunit 227 416 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Car09g00318 750 ProSiteProfiles G-alpha domain profile. 227 428 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Car09g00318 750 MobiDBLite consensus disorder prediction 680 715 - -
Car09g00318 750 MobiDBLite consensus disorder prediction 530 581 - -
Car09g00318 750 MobiDBLite consensus disorder prediction 535 556 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00318 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - cpap:110809268 491.886
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01312 Car09g00318 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00346 Car-Chr5:1986268 Car09g00318 Car-Chr9:1761810 5.48E-43 dispersed
Car05g00525 Car-Chr5:3051287 Car09g00318 Car-Chr9:1761810 2.83E-07 dispersed
Car05g00565 Car-Chr5:3320078 Car09g00318 Car-Chr9:1761810 4.23E-14 dispersed
Car09g00318 Car-Chr9:1761810 Car16g01126 Car-Chr16:9660387 8.68E-29 dispersed
Car10g00610 Car-Chr10:3109371 Car09g00318 Car-Chr9:1761810 2.73E-06 dispersed
Car11g00540 Car-Chr11:2926940 Car09g00318 Car-Chr9:1761810 4.70E-06 dispersed
Car12g00280 Car-Chr12:1848821 Car09g00318 Car-Chr9:1761810 4.68E-12 dispersed
Car12g01247 Car-Chr12:11773458 Car09g00318 Car-Chr9:1761810 1.08E-08 dispersed
Car19g00523 Car-Chr19:6846375 Car09g00318 Car-Chr9:1761810 3.95E-06 dispersed
Car01g01316 Car-Chr1:11778996 Car09g00318 Car-Chr9:1761810 2.67E-125 transposed
Car01g01312 Car-Chr1:11765437 Car09g00318 Car-Chr9:1761810 2.46E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009715 1 1 1 0 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00318 Car_Chr09 FPKM 0.0 1.398534 0.297462 0.965038 0.527554 1.094607 0.0 0.878329 0.344758 0.7147