Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00319 ATGGGTATGAAGAGGAAGTTGACATGGAAATCGATGATCGTTCCGAGTTGTTACACGGCGGCGCTCCGCCGTCTATCGGAGTCCGATGATGACGAGCGGCGGCGGGTTTCTAAAAAAGCTTCGTCGCAGAGGCTGTCGCTGTCGGACGCCAGTAACCCGAGTTCGGTCTTGTCGATCGACGACTTGTCGAATTCTCTTGTCGGACCGAAGCTTCATATTTTTTCGTTAGCGGAACTTCGAACCATCACTCACAATTTCGCTTCGTCCAATTTGCTTGGTGAAGGCGGGTTCGGTCCGGTCTACAAAGGGTTCGTGGATGATAAAATCAAACCGGGTTTGGAAGCTCAGCCGGTCGCCGTTAAATTGCTCGACCTCCATGGATCTCAAGGCCATAAAGAATGGCTGGCAGAGATTATAATTCTAGGGCAAATGAGGCATCAAAATTTGGTGAAACTAATCGGTTACTGTTGGGAAGAAGATTACAGACTTCTGGTTTACGAGTATATGGCCAGAGGCAGTTTAGAAAACCAGCTCTTTAGAAAGTATTCAGCTGCTTTACCTTGGTCAACGAGGATGAAAATTGCTTTAGAAGCAGCCAAAGGCCTTCAATTCCTTCACGAAGCCGATCCACCCGTTATATTCAGGGATTTCAAAACCTCTAATATCCTCTTGGATTCTGATTATACAACGAAGCTTTCAGATCTTGGGTTAGCTAAAGATGACGTTGACTGTGAAGACCAACCAGACACGTCTTGTATTATGGGAACTCGAGGCTATGCCGCTCCCGAGTACGTCAAATCTGGCCATTTGACGACGATGAGTGACGTGTACAGCTACGGCGTCGTTCTACTAGAGCTGCTGACGGGGAAGCGGTCAATGGACCGAAAGATCGGCGAGTTTCTAGTGGACTGGGCTAAGCCATTTCTAAAGGACTCGAAACGCCTCTACCGGATCATGGACCCAAAGCTCGAGGGCATGTACTCGGCCGACGGCGCACGTAAGGCTGCCGCCTTAGCTCATAAATGCTTGAGCCGCAGCCCCAAGCGACGGCCTTCCGTGACGGAAGTTGTTGACGTGTTGAAGTCTTTGCAAGACTTTAACGACGTGTGCACGGAGCCGTTTGTTTACGTGGTGGAGGACTGCGGCGGGGAGGAGGAGAAGAAGGGGAGAGATGGGAGAGTTATTGAAGGGAATGGGCTTGGGCTTGGTGGGCTGGGCCTAGGCCTGAATTGGAAAAATTGGAGGCCCATCTCTGTATGA 1260 50.24 MGMKRKLTWKSMIVPSCYTAALRRLSESDDDERRRVSKKASSQRLSLSDASNPSSVLSIDDLSNSLVGPKLHIFSLAELRTITHNFASSNLLGEGGFGPVYKGFVDDKIKPGLEAQPVAVKLLDLHGSQGHKEWLAEIIILGQMRHQNLVKLIGYCWEEDYRLLVYEYMARGSLENQLFRKYSAALPWSTRMKIALEAAKGLQFLHEADPPVIFRDFKTSNILLDSDYTTKLSDLGLAKDDVDCEDQPDTSCIMGTRGYAAPEYVKSGHLTTMSDVYSYGVVLLELLTGKRSMDRKIGEFLVDWAKPFLKDSKRLYRIMDPKLEGMYSADGARKAAALAHKCLSRSPKRRPSVTEVVDVLKSLQDFNDVCTEPFVYVVEDCGGEEEKKGRDGRVIEGNGLGLGGLGLGLNWKNWRPISV 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1777465 1779056 + Carg02798-RA Car09g00319 154056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00319 419 MobiDBLite consensus disorder prediction 29 53 - -
Car09g00319 419 Pfam Protein kinase domain 88 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00319 419 ProSiteProfiles Protein kinase domain profile. 86 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00319 - - - csv:101218136 736.873
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01311 Car09g00319 CCT
Car01g01311 Car09g00319 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01342 Car-Chr5:12122848 Car09g00319 Car-Chr9:1777465 8.83E-162 dispersed
Car09g00319 Car-Chr9:1777465 Car06g00152 Car-Chr6:938348 1.58E-131 dispersed
Car01g01311 Car-Chr1:11756567 Car09g00319 Car-Chr9:1777465 0 wgd
Car10g00689 Car-Chr10:3575767 Car09g00319 Car-Chr9:1777465 1.38E-158 wgd
Car11g00610 Car-Chr11:3335484 Car09g00319 Car-Chr9:1777465 4.02E-162 wgd
Car17g00646 Car-Chr17:6046593 Car09g00319 Car-Chr9:1777465 2.43E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000600 4 3 3 2 3 0 5 0 0 3 3 0 5 4 0 5 0 0 5 0 3 0 1 0 0 3 1 0 0 3 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89079 PF00069 Pkinase 8.70E-46 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00319 Car_Chr09 FPKM 10.633499 12.792459 29.075432 27.131145 42.358276 35.524204 42.922199 40.022366 36.975288 41.68713