Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00325 ATGGATCCCTTCGATTTGTTTCGGAAAGATTTTCCGGCTAAGCAAATAATGAATGTGTCGAAGAAAGGAACGCAAACCAACGAGGCAAACCTAAGCATTGGAAGCAAGGTGACAGCTTTGAATCCGAATGCTGCTGAGTTTATTCCGTTCGCCCTCAGAGCACCTTCAGTTGGAAGTAGTAGTGTGCCAGATTTGACTGAAAGATTTTCGTCTTCTGGGACGTTAGGAAAAGCTGTTCTAGATAGGACTGAGTCATCTGTGTCTAATAATTCTGATGACGAATCTCGTCAATTCTGGAGGCACCAGCTACCTGATGATATCATACCTGATTTCAAGTCAATGGGAGAAGATGAGAACCTATCTCTTGGAAATATTTCGTTGGCAGGCTTATCGTTGCATGATGACAACGAAGCCTCTTTATTCGCGGCTACTGTTGGCAGTGAATATTTGTTGAATGATCAGCAACATTCAAATCTAAATCACTTTAATGGAAATCAATTTACTGATAGGTTCAGATTCTCGACTGCTTCGTATGGAGAAGATCCATCTGCAGCTAGTCTTTTCCAAATTTCGAATAAACCTTGGCAGAAGCCAGTTCACAACAGTAATCTACTGGTTAGCAATGAGCGGCACCTTCCTTATCATGGAAATACTGTGAGGGGATCAACCATGGAAGTCTTGAGTGAGCAAACAACTATGGATGAAAGTGATACTCTGAACCCTGTTGATTTCTTGGCTTTACAGTTCCCTGGCTTTGCTGCCGAAAGCCTCGCAGAAGTTTACTTTGCCAATGGAGGTGACTTAAACCTGACTGTTGAGATGCTCACTCAATTAGAGCTTCAAGTCGATGGTGGGATAAGTCAAAATCTGAATTCCAAGACAATGTCTGCCCCCAATCTTAGTGGAATGGACTTTCCTGCACTTACAGTGTCAGGTGGTCAAAATGGTCATCCAAAATTTGATGGGGCTGATCTTCAACAAAGCACCCGTCCTTATCTTTCTTCTGATAAGGACGACATGCTTTTCTTCAAGCCGAGCACCGCCCCATCTAGAGGTGCTATTGATTTTGCTTCCACTGTCAGGAAATTAGCATCTCAGGATTCTGGTATGTGGAAGTACAATGGACACGGTTCTGCTGATGACTCTATTGGATCAAGTAGAAGTTCTCATATTTTAGGCGGTAAGTACACTACTGGTGGTCATGGGAAAGACACCTATAGTGAAAGGTTGCTCCACCGGGGTTCAGCTCGGGCTGCACCCGTTTGGCTTGAAACAGGCGAATCAGTTGGAAACATGTATTCTGAGCAGCGGGAGGAAGCACGTGATCATGCACGCCTTCGAAATGCATATTTTGAGCAGGCACGGCAAGCATACCTCATTGGTAATAAGGCTTTAGCAAAGGAGCTGAGTGTTAAGGGACAGTTTCATAATGTGCACATGAAGGCAGCTCATGGAAGGGCCCAAGATTCTATATACCGGCAGAGGAATCAAATTGGCGCAGACAACCAGGGAAATGGAAGGGGACACGAACGCATGATCGACCTGCACGGGCTGCATGTTAGCGAAGCGATTCATGTCCTGAAGCACGAGCTGAGTGTGCTGAGGGGTACTGCTCGGGCCGCTGGACAACGTCTGCAGGTTTATATTTGTGTTGGAACAGGACACCACACCCGCGGCTCCCGCACTCCTGCTAGACTTCCAGTGGCTGTACAGAGATATTTGATCGAAGAAGAAGGCCTCGACTTCAGTGAGCCGCAACCGGGGCTGCTTAGAGTTAAAATGCTTTTGCGAGCCAATCTCAAAGTGTCATCCATTTCCTCTCGTACGAGTTTCGCCTATCCCCAATTCTCCTCTCTGTCACCTTCGTCGTCGTCTTCTTCCTCTTCTCAATGGTTCTCTCTTCTCCGCTCCGCCATTGCCAAGGCCGACTTAAAGCTCGGGAAGCGAGCTCATGGATGTATCGTAACCTCCGGCGACCTTCCAGACCGGTTTCTGACCAACAATCTCATAACAATGTATTTCAAATGTGGCTCTCTGTGTTCCGCCCGCCAGGTGTTTGATAAAAGTTCCGACCGTGATCTCGTTACATGGAACTCCATTTTGGCTGCCTACGCCCACTCTGCTGATTCTAGTTTCGAGAATGTACTCGAGGGCTTTCGCCTCTTTCGTCTTCTACGCGAGTCTGGTTTTTCAGCAACTCGACTTACATTGGCGCCATTGTTGAAGCTGTGTGTGCTGTCTGGCTTCATCCAGGTCTCTGAGGCTATTCATGGATACGCTGCTAAGATCGGATTGGAATTGGACCTGTTTGTTTCAGGGGCTCTTGTGAATATATACTGCAAATATGGCCTGGTTGGTGAAGCCCGCTTACTGTTCGACGAAATGCCTGAAAGGGATTCTGTGTTGTGGAATGTAATGCTCAAGGCTTATGCTGAAAATGGTTTAGAAGACGAAGCTCTTCAGTTCTTCTCCGAGCTTCATCAAAGTGGGTTTCTTCCTGATTTCTCAAGCGTGCATCGCGTTCTCAGTGGTGGTAAGAATGGTGTTTCTGATCTCAGAAAGAGGTACAAGGAGCAGGTTAAGGCCTATGCAACGAAGATGTTTCGGTTCGAAGACGGTTTGGATGTATTTTCTTGGAACAAGAAGTTGTCTGGGTATCTTCAAGCTGGCCACAATTTAGCAGCCATTGATTGTTTCAAGAGCCTGTTGAGATCAACAGTGGGATATGATAGTATAACATTAGTCATTGTTTTATCTGCAGTTGTCGGCACAGATGATCTCGACTTGGGCGAACAAATTCACTCGCTTGTTATAAAAACCGACTATGATTCAGTAGTTTCTGTTTCGAATAGTCTCATGAACATGTACTCGAAGGCCGGGATCGTTTATGCTGCAGAAAAGATGTTCGTCAACTCACCAAACTTGGATCTAATTTCGTGGAACACAATGATATCGAGTTATGCACAGAATAATCTCGAAATGGAGGCGATCAGCACGTTCATAGATTTACTGCGCAATGACATCAGACCAGATCAATTTACCTTGGCAAGTGTTTTGAGAGCTTGCTCCACAGGTGATGAAGGAGAGTATTACACTCTCAGCTCACAGGTTCATGGCCATGTCATAAAATGTGGCGTTGTTAATGACAGTTTTGTATCGACAGCACTTATCGACGTGTACTCGAAGAGCGGGAAAGTGGACGAGGCTGAGTTTCTGTTGCGTAACAAATATGATTTTGATTTGGCGTCTTGGAATGCATTGATGTTTGGGTACATCAAGAGTAACAAAAGTAGAAAGGCATTGGAACTTTTGAGTTTGATGCATGAAATGGGGCTGCTGATTGATGAAATCACTCTGGCTACTGCCATTAAAGCTTCTGGTTGCTTGATCAATTTGGAGGTAGGGAAACAAATTCAAGCCTATGCAATCAAGCTAGGATTCAACAATGATTTATGGGTCAGTAGTGGTGTTTTGGATATGTACATTAAGTGTGGGGACATGCCAAATGCTCTTGAATTGTTTGGTGAAATTAGCAGACCTGATGATGTTGCTTGGACGACTATGATCTCGGGATACGTCGATAATGGCGACGAGGATCGTGCTCTTGCTGTGTACCATTTAATGAGGGTGTCTGGAGTTCAACCCGATGAATATACCTTAGCTACCCTTGTCAAAGCGAGTTCTTGTCTAACCGCTCTCGAACAAGGGAAACAGATTCATGCTAACGTGATTAAGCTCAATTATTCTTTCGACCATTTTATTGGTACTTCCCTAGTCGACATGTATTGCAAATGTGGAAGCGTTCGAGACGCCTATCGTATATTTGGGATGATGGATGTCGGGAAAGTTGCCTTCTGGAATGCCATGTTATTAGGCTTAGCCCAACATGGCAATGCTGATGAAGCTTTGAATCTTTTCAAAAGGATGCAATCAAGTGGTATTCAACCTGACAAAGTTACTTTCATTGGAGTTCTCTCTGCTTGTAGCCATTCTGGTTTGTTCTCTGAAGCCTACAAATACTTCGACGCAATGCTCGAAACATATGGGATCGTACCTGAGATCGAGCATTACTCGTGTCTGGTGGACGCACTTGGTCGGGCAGGACGTATTCAAGAGGCCGAACGCGTAATAGCATCGATGCCATTTGAAGCTTCTGCCTCGATGTATAGGGCGTTGCTTGGTGCTTGCAGGACTAAAGGAGATACGGAAACAGCAAAGCGTGTTGCTGATAAACTCCTAGCCTTGGATCCATCCGATCCCTCAGCTTATGTCCTCTTATCAAACATTTATGCTGCTTCCAGACAATGGGATGATGTTACTGATGCTAGAAACATGATGAAGCTGAAGAATGTTAAGAAGGACCCGGGTTTTAGCTGGATCGACGTGAAAAATAAAGTGCATTTGTTCGTGGTTGACGATAGATCACACCCGCAAGCTGATTTGATATACGAGAAAGTTGAGGATCTTATGAAAAGAATACGAGAGGAAGGATCTTACGTCCCAGACACAGACTTTATGTTGCTTGACGTTGAAGAAGAGGAAAAAGAACGTGCACTGTACTATCATAGTGAGAAACTTGCATTAGCTTTCGGGCTAATCAGCATGCCTCCCACGGCAACCATTCGTGTGATAAAGAACTTAAGGGTTTGTGGTGATTGTCATAGTGCTATAAAGTGCATATCGAAGCTCACCCAGAGGGAGATCGTTCTAAGAGATGCAAACAGATTCCATCACTTTAGGAATGGAATTTGTTCGTGTGGTGATTACTGGTAG 4773 44.92 MDPFDLFRKDFPAKQIMNVSKKGTQTNEANLSIGSKVTALNPNAAEFIPFALRAPSVGSSSVPDLTERFSSSGTLGKAVLDRTESSVSNNSDDESRQFWRHQLPDDIIPDFKSMGEDENLSLGNISLAGLSLHDDNEASLFAATVGSEYLLNDQQHSNLNHFNGNQFTDRFRFSTASYGEDPSAASLFQISNKPWQKPVHNSNLLVSNERHLPYHGNTVRGSTMEVLSEQTTMDESDTLNPVDFLALQFPGFAAESLAEVYFANGGDLNLTVEMLTQLELQVDGGISQNLNSKTMSAPNLSGMDFPALTVSGGQNGHPKFDGADLQQSTRPYLSSDKDDMLFFKPSTAPSRGAIDFASTVRKLASQDSGMWKYNGHGSADDSIGSSRSSHILGGKYTTGGHGKDTYSERLLHRGSARAAPVWLETGESVGNMYSEQREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQFHNVHMKAAHGRAQDSIYRQRNQIGADNQGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARAAGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLRVKMLLRANLKVSSISSRTSFAYPQFSSLSPSSSSSSSSQWFSLLRSAIAKADLKLGKRAHGCIVTSGDLPDRFLTNNLITMYFKCGSLCSARQVFDKSSDRDLVTWNSILAAYAHSADSSFENVLEGFRLFRLLRESGFSATRLTLAPLLKLCVLSGFIQVSEAIHGYAAKIGLELDLFVSGALVNIYCKYGLVGEARLLFDEMPERDSVLWNVMLKAYAENGLEDEALQFFSELHQSGFLPDFSSVHRVLSGGKNGVSDLRKRYKEQVKAYATKMFRFEDGLDVFSWNKKLSGYLQAGHNLAAIDCFKSLLRSTVGYDSITLVIVLSAVVGTDDLDLGEQIHSLVIKTDYDSVVSVSNSLMNMYSKAGIVYAAEKMFVNSPNLDLISWNTMISSYAQNNLEMEAISTFIDLLRNDIRPDQFTLASVLRACSTGDEGEYYTLSSQVHGHVIKCGVVNDSFVSTALIDVYSKSGKVDEAEFLLRNKYDFDLASWNALMFGYIKSNKSRKALELLSLMHEMGLLIDEITLATAIKASGCLINLEVGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDDVAWTTMISGYVDNGDEDRALAVYHLMRVSGVQPDEYTLATLVKASSCLTALEQGKQIHANVIKLNYSFDHFIGTSLVDMYCKCGSVRDAYRIFGMMDVGKVAFWNAMLLGLAQHGNADEALNLFKRMQSSGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMLETYGIVPEIEHYSCLVDALGRAGRIQEAERVIASMPFEASASMYRALLGACRTKGDTETAKRVADKLLALDPSDPSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQADLIYEKVEDLMKRIREEGSYVPDTDFMLLDVEEEEKERALYYHSEKLALAFGLISMPPTATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGICSCGDYW 1590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1792944 1800019 + Carg02804-RA Car09g00325 154062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00325 1590 Pfam DYW family of nucleic acid deaminases 1499 1590 IPR032867 GO:0008270
Car09g00325 1590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 976 1010 IPR002885 -
Car09g00325 1590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1181 1215 IPR002885 -
Car09g00325 1590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1080 1114 IPR002885 -
Car09g00325 1590 ProSiteProfiles Smr domain profile. 513 595 IPR002625 -
Car09g00325 1590 Pfam E+ motif 1466 1493 IPR046849 -
Car09g00325 1590 Pfam E motif 1401 1461 IPR046848 -
Car09g00325 1590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 799 833 IPR002885 -
Car09g00325 1590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 768 798 IPR002885 -
Car09g00325 1590 Pfam Domain of unknown function (DUF1771) 433 496 IPR013899 -
Car09g00325 1590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1282 1316 IPR002885 -
Car09g00325 1590 Pfam PPR repeat 1356 1380 IPR002885 -
Car09g00325 1590 Pfam PPR repeat 978 1007 IPR002885 -
Car09g00325 1590 Pfam PPR repeat 801 831 IPR002885 -
Car09g00325 1590 Pfam PPR repeat 774 798 IPR002885 -
Car09g00325 1590 Pfam PPR repeat 1256 1278 IPR002885 -
Car09g00325 1590 Pfam PPR repeat 1083 1112 IPR002885 -
Car09g00325 1590 Pfam PPR repeat 1054 1073 IPR002885 -
Car09g00325 1590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1317 1352 IPR002885 -
Car09g00325 1590 Pfam PPR repeat family 1283 1329 IPR002885 -
Car09g00325 1590 Pfam PPR repeat family 1180 1226 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00325 - - - cmo:103493901 2731.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01299 Car-Chr4:7518543 Car09g00325 Car-Chr9:1792944 3.79E-07 dispersed
Car09g00325 Car-Chr9:1792944 Car18g01137 Car-Chr18:11304778 2.91E-42 dispersed
Car09g00421 Car-Chr9:2332184 Car09g00325 Car-Chr9:1792944 2.87E-06 dispersed
Car01g01308 Car-Chr1:11740242 Car09g00325 Car-Chr9:1792944 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g177 . . . . . . . . . . . . Car09g00325 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012447 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 0 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00325 Car_Chr09 FPKM 3.271318 4.500072 7.897793 7.192692 5.20465 2.008833 3.227401 9.418967 8.133231 8.934913