Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00326 ATGCCCCCCGTCAACGCCGCCGTCCACCGCCGCCACCAGTCCTCTGCATCCCTGTTACCTCAATTCCACACACCTACTAATGCTGGCGATGACGACGATCTTCTTCCTTCCACCCAGACAGTTCTCTCATCGCGATCTTCAACCTCGCATAAACCCTTAGCGACCTCCGACTTATCGCTCCACATTCGCGCTTCCAAGAGGCCGAAGCGTTCTGTTCCGACGGCCACTGGACAGGTAAACATTCCCTCTATAACACATTGCGATGTCGGATTTAAGCCAAATTTTGATAGACACGATGGCGCTGCTGCTTTGGATGATGGTGAAGTATTCGGTTCGTCGGAAATGGATTTGGGTTGCAGTTTGGATTTGATACAGCCGAGCATGGTTGGCTGCAGTTACGAAACTCATGATGCAAACTCGGTAGAGGAGATATTTGATGGGGATGGTGATTTTTCTGGTGCGACGGATGAATGTAAGGGGTCGAAGCTAAAGGGGGGCTACTTACTCAATTCGATTGAATCTAGGTTGATGAATTCGAGAGTAGATTGCGATGTTGGAGTCAGTGGCAGTGGAGTTGACAAGGAGAGCAGTGATGATTTTGAGTCGGATAAGGAGCTAGACTTGTTGCTTAATCTGCATTCGCAACTGGATGAGGAAGACCGTATTAGTGGAGTGGGATTTGGTACTGAGGAATCATATTTTCCAGTGGATGAAGATCTGATTCAATGTCCTCTTTGTGGAGTTGATATTTCTGATCTTAGCGACGATCAACGTCTTGTACACACAAATGATTGTATTGACAAAGAGGACGCCCAAGCTCAAACTACTGCTCACACCCCTGATAAAAAGCAAGCTTCAGGGCCTCAACAATCTGCTGATAATTCCAGATTTTCAACTGTTCTCAAATGGTTGCATGATCTTGGTTTATCGAAATATGAAGATATTTTTGTTAGGGAGGAGATCGATTGGGAAACATTACAGTGGTTGACTGATGAGGTGTGCTTCTTCAAGGATCTCAATAATGTGGGTATTACTGCACTTGGCCCCAGAAGGAAGATCACACGTGCTTTGTCCGAACTCAGAAAAGAATCTTCTGCAGTTGAAACTTGCACGAATACACATGCCCCTTCTGGTACTGGGCAACATAGTAACAATGGTTCAGATGGATGTGAAGGATCAACCAGTGGAACTAATAGAACACCTACGAACAAGTTGATTACTGATTATTTCCCAGGCTTTGCCACTAATAAGAAGAATGCATGCAGCATTTCTACTGGTCAGAGAGATGTGGGAAAAAAGTTACCTGACTCTCTTAACAAAGATAAAAGTAAAACTGCAAAGAGAAATGTTAGAAATGAGAAGCTTGGGAATGTGCCAGTCTGGAGTTGTATACCAGGGACACCATTTAGAGTGGATGCTTTTCGACATCTTAGAGGAGACTGTTCCCATTGGTTTCTTACTCACTTTCACATGGATCATTATCAAGGTTTAACAAAGTCATTTCGTCATGGAATGATTTATTGTTCGCCTATTACGGCAAAGCTGGTAAACATGAAGCTTGGAATCCCATGGGAAAGGTTACAAGTTTTACCTCTCAACCAAAAAGTTAACATTGCGGGAACAGATGTAACCTGTTTTGATGCTAATCATTGCCCTGGTTCAATAATCATACTCTTTGAACCACCCAGTGGTAAGGCTGTTCTACATACAGGGGACTTCCGATATTGTGAGCAAATGGGAAGCTTGTCGGTTTTTCAAACATGTTGTATCCATACTCTGATCCTTGATACCACGTATTGTGATCCACAGTATGATTTCCCAAAGCAGGAGACCGTTATACAGTTTGTAATTGATGCCATTCAAGCTGAAGCTTTCAACCCTAAAACCCTTTTCCTGATTGGATGTTATACCATCGGAAAGGAACGACTTTTTTTGGAAGTTGCCCGCGTTCTGCGCAAGAAGGTGTATGTAAGTTCAGCAAAGTTACGCATTTTGAAATGCTTGGGGTTCTCAGCGGAGGACATGCAGTGGTTTACAGTGAATGAACGGGAAAGTCACATACATGTCGTACCTCTGTGGACACTTGCGAGCTTCAAACGACTGAAGCATTTATCAAATCAATATGCAAGTCGATTCAGTCTTATAGTTGCTTTCTCTCCCACCGGCTGGGCACTTTCAAAAGGAAAGAAGAAATCTCCTGGAAGAAGGTCGCAGCAAGGTACAATTATAAGATATGAAGTGCCATATAGTGAGCATAGCAGCTTCTCAGAACTGAAGGATTTTGTAAAGCTTGTCTCTCCTGTAAACATAATACCAAGTGTGAATAATCATGGACCTGACTCAGCCCGTGCCATGATCTCGCTTTTGTCATCTTGA 2376 43.69 MPPVNAAVHRRHQSSASLLPQFHTPTNAGDDDDLLPSTQTVLSSRSSTSHKPLATSDLSLHIRASKRPKRSVPTATGQVNIPSITHCDVGFKPNFDRHDGAAALDDGEVFGSSEMDLGCSLDLIQPSMVGCSYETHDANSVEEIFDGDGDFSGATDECKGSKLKGGYLLNSIESRLMNSRVDCDVGVSGSGVDKESSDDFESDKELDLLLNLHSQLDEEDRISGVGFGTEESYFPVDEDLIQCPLCGVDISDLSDDQRLVHTNDCIDKEDAQAQTTAHTPDKKQASGPQQSADNSRFSTVLKWLHDLGLSKYEDIFVREEIDWETLQWLTDEVCFFKDLNNVGITALGPRRKITRALSELRKESSAVETCTNTHAPSGTGQHSNNGSDGCEGSTSGTNRTPTNKLITDYFPGFATNKKNACSISTGQRDVGKKLPDSLNKDKSKTAKRNVRNEKLGNVPVWSCIPGTPFRVDAFRHLRGDCSHWFLTHFHMDHYQGLTKSFRHGMIYCSPITAKLVNMKLGIPWERLQVLPLNQKVNIAGTDVTCFDANHCPGSIIILFEPPSGKAVLHTGDFRYCEQMGSLSVFQTCCIHTLILDTTYCDPQYDFPKQETVIQFVIDAIQAEAFNPKTLFLIGCYTIGKERLFLEVARVLRKKVYVSSAKLRILKCLGFSAEDMQWFTVNERESHIHVVPLWTLASFKRLKHLSNQYASRFSLIVAFSPTGWALSKGKKKSPGRRSQQGTIIRYEVPYSEHSSFSELKDFVKLVSPVNIIPSVNNHGPDSARAMISLLSS 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1800349 1806152 + Carg02805-RA Car09g00326 154063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00326 791 MobiDBLite consensus disorder prediction 367 401 - -
Car09g00326 791 Pfam SAM domain (Sterile alpha motif) 294 361 IPR001660 GO:0005515
Car09g00326 791 MobiDBLite consensus disorder prediction 31 55 - -
Car09g00326 791 MobiDBLite consensus disorder prediction 425 448 - -
Car09g00326 791 Pfam DNA repair metallo-beta-lactamase 674 777 IPR011084 -
Car09g00326 791 MobiDBLite consensus disorder prediction 271 293 - -
Car09g00326 791 ProSiteProfiles SAM domain profile. 295 363 IPR001660 GO:0005515
Car09g00326 791 MobiDBLite consensus disorder prediction 433 448 - -
Car09g00326 791 MobiDBLite consensus disorder prediction 10 24 - -
Car09g00326 791 MobiDBLite consensus disorder prediction 1 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00326 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - csv:101218609 1276.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00326 Car-Chr9:1800349 Car11g00206 Car-Chr11:1187610 1.03E-06 dispersed
Car02g00451 Car-Chr2:3537707 Car09g00326 Car-Chr9:1800349 1.33E-13 transposed
Car19g00747 Car-Chr19:8333228 Car09g00326 Car-Chr9:1800349 2.86E-36 transposed
Car20g00868 Car-Chr20:7666528 Car09g00326 Car-Chr9:1800349 8.01E-63 transposed
Car01g01307 Car-Chr1:11738057 Car09g00326 Car-Chr9:1800349 1.52E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00326 Car_Chr09 FPKM 16.554285 16.790398 11.41796 11.513199 10.977136 7.935166 8.66587 140.299362 135.016068 143.707611