Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00334 ATGGTCTGCGAGATGGAGACTGAGGTTATTGAAGATATGGACATCGAAGCTGTTCCTTCTATGTGGCCTGAGGACGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAAGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATACCTCGCAAAACAGTGGGAGTATAAGCAAGCGAATGCTGTGCGTCTCCTTAGAGAAGAACTTGACATCCTCAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTAGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTCATTCAAAGTAAGGGAGTTGAAATTGATGCAGCGTATGATACAGTGACATACTGGAAGCAGCGAGCCATAGATCTGGAAAAACTGTTGGAAGCAAGCCTACAGCGCGAGCAGATGCTTGCAGAGAAGCTCAGGGAAAACATAAAAAATGTTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTGCTGCAGAATGCACCTGTGGTTTTTGGCCATCAGGACAAAGAAATGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAGATTTTTACTGGTGCTGGTGTTAAAGAATCCCAAGATTTCAAGAAAGAAGTGCTAGAGAAAGGGCTACCTGCAAAGAGGGAGATTCAGTTTGATACGGACTTATTTGGGCTTAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGGCTGGGGAAACAATTGGAATAAATTATGTGGGAATGGACATAACCGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGCGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCACATCACGGAGGAGACAATGCGAGCCAAGCAAATGCTAGCAACCATGTCACATGAAATTAGGTCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAGCGACATCTGTTGGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTCGAGTCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTGAAGCATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTTTGGAGGGACGTATAGCAGATGATGTCCCTATAGAGGTCATCGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGTAACGCAATCAAGTTCACTCATCAAGGAAAGGTTGGAATTAACCTTTATGTGCTACCCTATCCACCCATCGGAAAAGGAGAAGAAAGCCCCAAGAAATCAACGACTGATAACTCAACAGTTCCGGTAAATGGTTGGCAAGAAGGAACATGTCTTCCAGCCCCTCAGAATGGCTCGCGTGGCCAGAAACACGGTGACAGAAATCACTTGCATTTTGATGCACCAGGAACACCTAGTAAAAGTGAAACCACACAGAATGGAAATAGAGAAAACGAATCTTGTTCACCAGAAACGACGGTATGGATACGGTGTGACGTTTTCGACACAGGAATTGGAATACCAGAGAATGCATTACCAACCCTTTTTAAGAAGTACATGCAAGCTAGTGCCGACCATGCTCGCAAGTATGGAGGGACTGGACTTGGGCTAGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCTACATTTACATTTGTTTTGCCATACAAGGTTTCAACCACCTGCAGTCCTTCGGATGATTCCGATGATCTCTCCGACGACGAGTCCACAAATGACGAAATGACTGAGGGCTTCTTCCAATTCCAACCCCACAGTTTCAGTTCTCTAGCATCTTCTAATGGCACAAGGATCATCCCAAACTCGATGTTACATACAACTGGGTATCACACCTCAACCAAACTCAATGGATTTTCTGAACCTTCTTTCCCTATTCCCACGAACAACATCACACCACAAGAGACTGCTTCTCTTAGAGATGTCCGTTATGCCAATGCTGCTGCGGTAACCTCAAGCGAATCACAATGTTCATCGAGTCGGATGAACTCAGAGCTTGATAACGAAAACCAACCAGACACTAATGCTCGGTCCCAAAATGTTGGAGTGAATTCAGTTCACAGATCAGAAACAATGAAGCAAGAAAATGGATTGGAAAAGCCAAGTAATAAACTTCTAAAAACAGAACAGGGGAAGGAGAGATCCGATGATGGAAGTAACCATTGCAGAAGTAGCAGTAGTAGTGGTTCTGAAGTCACAATGGGATTGGAACCCAGAATTCTTCTTGTCGAGGATAATAAGACCAATATTATGGTTACTCAATCCATGATGAAGAAGTTCGGCCAAAAAATCCACGTCGTAACTAACGGAATCGAGGCTGTTCGTGCAGTTCAACGCCGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCAGCTGTAAATGCTGGAATCCAGCCAACTACGCCTTATTGGACTCCTTCCTCCCGCAGGATACCCATCGTTGCTATGACGGCAAATTCAATGTCAGAAAGCGCTGATGAGTGTTATGAAAATGGTATGGACTCGTTCGTATCAAAGCCAATCTCCTTCCAGAAGTTGAAAGAATGTTTGGAACGGTATTTACCACAACCTCCCTTGTAA 3006 43.05 MVCEMETEVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPRADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLREELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVIQSKGVEIDAAYDTVTYWKQRAIDLEKLLEASLQREQMLAEKLRENIKNVEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKEMRYRFIYNHFPSLQEEDIIGRTDVEIFTGAGVKESQDFKKEVLEKGLPAKREIQFDTDLFGLKTFLIYVEPVFSKAGETIGINYVGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGKGEESPKKSTTDNSTVPVNGWQEGTCLPAPQNGSRGQKHGDRNHLHFDAPGTPSKSETTQNGNRENESCSPETTVWIRCDVFDTGIGIPENALPTLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSDDSDDLSDDESTNDEMTEGFFQFQPHSFSSLASSNGTRIIPNSMLHTTGYHTSTKLNGFSEPSFPIPTNNITPQETASLRDVRYANAAAVTSSESQCSSSRMNSELDNENQPDTNARSQNVGVNSVHRSETMKQENGLEKPSNKLLKTEQGKERSDDGSNHCRSSSSSGSEVTMGLEPRILLVEDNKTNIMVTQSMMKKFGQKIHVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGSWEAAVNAGIQPTTPYWTPSSRRIPIVAMTANSMSESADECYENGMDSFVSKPISFQKLKECLERYLPQPPL 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1846239 1853402 + Carg02814-RA Car09g00334 154071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00334 1001 Coils Coil 181 208 - -
Car09g00334 1001 MobiDBLite consensus disorder prediction 769 852 - -
Car09g00334 1001 MobiDBLite consensus disorder prediction 529 552 - -
Car09g00334 1001 MobiDBLite consensus disorder prediction 769 810 - -
Car09g00334 1001 Coils Coil 92 112 - -
Car09g00334 1001 MobiDBLite consensus disorder prediction 522 590 - -
Car09g00334 1001 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Car09g00334 1001 Coils Coil 342 362 - -
Car09g00334 1001 MobiDBLite consensus disorder prediction 811 839 - -
Car09g00334 1001 MobiDBLite consensus disorder prediction 572 590 - -
Car09g00334 1001 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Car09g00334 1001 ProSiteProfiles Response regulatory domain profile. 858 996 IPR001789 GO:0000160
Car09g00334 1001 Pfam Response regulator receiver domain 859 926 IPR001789 GO:0000160
Car09g00334 1001 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01298 Car09g00334 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00334 Car-Chr9:1846239 Car15g00833 Car-Chr15:4772091 7.26E-54 dispersed
Car01g01298 Car-Chr1:11683969 Car09g00334 Car-Chr9:1846239 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4055 PF02518 HATPase_c 8.70E-28 CL0025 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00334 - - csv:101219807 1690.63