Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car09g00337 | ATGGGCTATCTGGATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTTAGCGGCGGGGGACTTAGTCAGAATGGAAAGTTCAGCTATGGATATGCTAGCTCTCCAGGAAAGAGATCTTCGATGGAAGATTTTTACGAGACACGAATCGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTCGACGGTCATGGCGGAGCACGAGCAGCAGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCGGATACCAAATCTGCTATAGCCGATGCATACAACCACACAGACACGGAATTTCTGAAGTTGGAAAACAATCAAAACAAAGATGCTGGATCAACTGCTTCCACTGCCATCCTGGTTGGTGATCGTTTACTTGTTGCAAATGTTGGTGATTCTAGAGCTGTTATTTCCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATCGAGGATGCAGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTCTCACGTGCATTTGGGGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCCGAAATTCAGGAGGAAAAGATTGATAGCTCACTTGAGATTCTTATACTTGCAAGCGATGGACTGTGGGATGTCGTCTCTAACGAGGAAGCTGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCTGCAAAGAGGTTGTTACAAGAAGCATGTCAGAGAGGCAGTGCCGATAACATTACTTGCGTCGTCGTCCGTTTCTTGGCGAATCAAGGAAGTTCCTCAGGGTAA | 870 | 46.32 | MGYLDSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYNHTDTEFLKLENNQNKDAGSTASTAILVGDRLLVANVGDSRAVISRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEILILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLLQEACQRGSADNITCVVVRFLANQGSSSG | 289 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1867742 | 1871134 | - | Carg02817-RA | Car09g00337 | 154074 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car09g00337 | 289 | SUPERFAMILY | PP2C-like | 28 | 280 | IPR036457 | - | |
| Car09g00337 | 289 | ProSitePatterns | PPM-type phosphatase domain signature. | 65 | 73 | IPR000222 | GO:0043169 | |
| Car09g00337 | 289 | Gene3D | - | 26 | 285 | IPR036457 | - | |
| Car09g00337 | 289 | SMART | PP2C_SIG_2 | 45 | 280 | IPR001932 | - | |
| Car09g00337 | 289 | CDD | PP2Cc | 33 | 280 | IPR001932 | - | |
| Car09g00337 | 289 | PANTHER | PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C | 4 | 287 | - | - | |
| Car09g00337 | 289 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 280 | IPR001932 | - | |
| Car09g00337 | 289 | Pfam | Protein phosphatase 2C | 63 | 273 | IPR001932 | - | |
| Car09g00337 | 289 | PANTHER | ALPHABET, ISOFORM E-RELATED | 4 | 287 | - | - | |
| Car09g00337 | 289 | SMART | PP2C_4 | 24 | 278 | IPR001932 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g01296 | Car09g00337 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02329 | Car-Chr4:18764937 | Car09g00337 | Car-Chr9:1867742 | 4.51E-14 | dispersed | |
| Car08g01038 | Car-Chr8:7100785 | Car09g00337 | Car-Chr9:1867742 | 8.14E-14 | dispersed | |
| Car09g00337 | Car-Chr9:1867742 | Car15g00584 | Car-Chr15:3224526 | 2.63E-130 | dispersed | |
| Car15g00023 | Car-Chr15:232537 | Car09g00337 | Car-Chr9:1867742 | 9.36E-48 | dispersed | |
| Car17g00230 | Car-Chr17:1416815 | Car09g00337 | Car-Chr9:1867742 | 3.20E-21 | dispersed | |
| Car17g00957 | Car-Chr17:7770078 | Car09g00337 | Car-Chr9:1867742 | 3.21E-42 | dispersed | |
| Car18g01234 | Car-Chr18:11831260 | Car09g00337 | Car-Chr9:1867742 | 6.98E-25 | dispersed | |
| Car06g00012 | Car-Chr6:139141 | Car09g00337 | Car-Chr9:1867742 | 1.28E-45 | transposed | |
| Car01g01296 | Car-Chr1:11667146 | Car09g00337 | Car-Chr9:1867742 | 0 | wgd | |
| Car12g01132 | Car-Chr12:11013834 | Car09g00337 | Car-Chr9:1867742 | 7.31E-42 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car09g00337 | K17506 | - | csv:101216117 | 549.666 |