Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00340 ATGGCGCCTCTTTCTTCAATGCTTTTCTTTGCTTTTTGTTTCCTTTTCTTTTACTCTTCCGCCGGGAAAGTCTCGCCGGACGCCCACCGCCTCACCGTCGAACTCGCTGACCTTCTGCCGTCCGCCGCCTGCAACCGCCGCTCCGTTCAAGCCCAAGATTCAGGTCGGAGAACGCAGTCATCACTGGAAGTGATTCACCGGCACGGGCCATGCGGCGGCGGAGAATCGAAAGCACCGACGGCAGAGGAATTATTCGTTCAAGATCAGGCTCGAGTGGATTTCATCCACTCGAAATTCTCAGGGGACTTCAAATCCATCGATCGTTTACGGCCGTCGAAGGCCACGAAAATCCCGGCGAAGTCCGGCGCCACCATCGGGTCCGGGAATTACATAGTGAATGTTGCTCTGGGGACGCCGAAGAAGTACTTATCGCTTATATTTGACACCGGCAGCGATCTGACGTGGACTCAGTGCGAGCCGTGTGCCAGATATTGCTACAGCCAGAAGGACCCTGTTTTCGCCCCTTCCCAATCCACCACTTATTCCAACATCACTTGTTCTTCGCCTATCTGCTCTCAGCTTGAATCGGGCACAGGGAACCAACCTGGTTGCTCCGCCGCGAAATCCTGCATTTACGGAATACAATACGGCGATCAATCTTTCTCCGTCGGATATTTCGCCAAAGAAACTTTAACCTTAACGCCCACCGATGTTATCAGCAATTTCCTCTTCGGTTGCGGCCAAAACAACCGTGGACTCTTCGGCAGCGCCGCCGGTCTCATTGGCCTTGGCCAGGACAAAATCTCCATCGTCAAACAGACCGCCCAAAAGTACGGTCAGATCTTCTCCTACTGCCTCCCTAAAACCTCAAGTTCCACCGGCTATCTAGCCTTCGGCGGCAGTGGCGGTGGCGGCGGTGCTCTGAAATACACGCCGATCACAAAAGCACACGGCGTCGCGAATTTCTATGGCGTCGACATCGTCGGTATGAAGGTCGGAGGAATTCAGATCCCGATCTCGGCGTCGGTCTTCTCGACCTCCGGCGCGATCATCGATTCCGGCACGGTGATTACGCGGCTGCCGCCAGATGCGTACAGCGCCTTGAAATCGGCGTTTCAGAAAGGAATGACGAAGTATCCGAAAGCGCCGGAGCTTTCGATTCTGGACACGTGTTACGATCTGAGCAAATACACCTCTGTAGAGATCCCGAAAGTGGATTTTCTTTTCAAAGGAGGAACGGTACTCGAACTGGACGGCACCGGAATCTTGTACGGAGCATCGACGACTCAGGTCTGTTTGGCATTCGCCGGAAATATGGATCCGAGCTCCGTTGCCATTATTGGGAACGTGCAGCAGAAGACTCTGCAGGTAGTTTACGATGTCGGTGGAGGGAAGATTGGGTTTGGTTATAATGGTTGTTAA 1422 53.59 MAPLSSMLFFAFCFLFFYSSAGKVSPDAHRLTVELADLLPSAACNRRSVQAQDSGRRTQSSLEVIHRHGPCGGGESKAPTAEELFVQDQARVDFIHSKFSGDFKSIDRLRPSKATKIPAKSGATIGSGNYIVNVALGTPKKYLSLIFDTGSDLTWTQCEPCARYCYSQKDPVFAPSQSTTYSNITCSSPICSQLESGTGNQPGCSAAKSCIYGIQYGDQSFSVGYFAKETLTLTPTDVISNFLFGCGQNNRGLFGSAAGLIGLGQDKISIVKQTAQKYGQIFSYCLPKTSSSTGYLAFGGSGGGGGALKYTPITKAHGVANFYGVDIVGMKVGGIQIPISASVFSTSGAIIDSGTVITRLPPDAYSALKSAFQKGMTKYPKAPELSILDTCYDLSKYTSVEIPKVDFLFKGGTVLELDGTGILYGASTTQVCLAFAGNMDPSSVAIIGNVQQKTLQVVYDVGGGKIGFGYNGC 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1879296 1881957 - Carg02820-RA Car09g00340 154077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00340 473 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190|GO:0006508
Car09g00340 473 ProSiteProfiles Peptidase family A1 domain profile. 130 469 IPR033121 -
Car09g00340 473 Pfam Xylanase inhibitor C-terminal 323 468 IPR032799 -
Car09g00340 473 Pfam Xylanase inhibitor N-terminal 130 300 IPR032861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00340 - - - csv:101215397 799.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00488 Car-Chr8:3111989 Car09g00340 Car-Chr9:1879296 5.14E-84 dispersed
Car09g00340 Car-Chr9:1879296 Car08g00098 Car-Chr8:568777 3.91E-90 dispersed
Car09g00340 Car-Chr9:1879296 Car17g00861 Car-Chr17:7261433 3.59E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g617 . . . . . . . . . . . . Car09g00340 . . . Cpe06g00279 . . . . . . . Cla05g01658 Cam05g1769 Cec05g1777 Cco05g1835 Clacu05g1759 Cmu05g1645 Cre05g1773 Cone4ag1728 Cone7ag1648 Cone17ag0969 . . . . . . . . . . . . . . . Cmo09g00393 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00340 Car_Chr09 FPKM 18.617716 22.428972 12.404921 16.758051 11.977559 10.51423 11.811283 2.715502 2.450577 2.298461