Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00344 ATGAGTAGTTCTGTGTGTTTCAGGCCTGTGATTATTGCGAAATCGATTGACGGCAGAGGATTTTCTTCTACGAGAATCATACTAATCGGCTCAGAGTTTGCTGCGAATCGTGTTTCGTTCACCGATTCGAGGCTACTGAGCTCTAGGATTTGTGGCGCGCGAGCTTCTATGGTGGATTCTTATGGAAGCTCGGATTTCGTCAAGAGGATGGAACAAGCATGGGAGATCTCTCAGCAACCAACGCCTATTTGCTGCTCTTCTTGCCACTCAAATGGACATGTGGAGTGCCAATGGTGTAAGGGAACGGGCTTCTTTATTCTCGGAGATAATATGCTCTGTCAAGTTCCTTCCAGAAACACTAGCTGTGTTATTTGCGCCGGCAAGGGCTCTATCCGATGCTTCGACTGTAAGGGAACAGGTTACCGGGCCAAGTGGCTGGGTGAGCCCCCCGTTTCTAAATAG 462 48.7 MSSSVCFRPVIIAKSIDGRGFSSTRIILIGSEFAANRVSFTDSRLLSSRICGARASMVDSYGSSDFVKRMEQAWEISQQPTPICCSSCHSNGHVECQWCKGTGFFILGDNMLCQVPSRNTSCVICAGKGSIRCFDCKGTGYRAKWLGEPPVSK 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1896876 1900625 - Carg02824-RA Car09g00344 154081

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00344 - - - bhj:120085931 286.189
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g603 . . Bda01g00655 Bda03g00111 . Bpe02g00527 . . . . . . Car09g00344 . . . Cpe06g00283 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00095 . . Sed13g1949 . Cmo09g00397 Cma09g00396 . . . . . Bhi09g03040 Tan01g3532 Cmetu07g2214 . Hepe01g1947 Mch11g0482 . . . . . . . . . . . Cme07g00142
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009712 2 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00344 Car_Chr09 FPKM 10.769763 10.549657 12.346642 12.196471 16.877457 16.40111 16.174585 26.881933 28.962337 29.115231