Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00347 ATGTTTCAAAGAAACCCATCTTATTCTAACCCAACACCATGCAATCATCTAGCTGATTACAAGCTCAGATATGGCTTAAACGGCTATAAATCCATTCAACATCACCTTAAAACTACCCCAAATGGAAGAACTAGTATTCAAAACCCCGATTCGAAGCTACCCAGATGCGGTTCTTGCGATGGGTATGAAGGGAGGCTCTACATATGCTTGATTTGTGCTTCAATCTCTTGCTCAAATCATACCCTTCTTCATAACCAGTCCGAAAACGGCCATGATTTGGCCGTCGACGTTGAGAGAGCGGAGCTTTATTGTTATGCTTGCTCCGATCAGGTTTACGACCCGGATTTTGATCGGACGGTGATGTCGAAGCACATCGTCGCCGCCGTACTGGAGAAATCGCAATCGGCGGAGAGATCGAGTAAGAGGAGGAGATTTGGATCGTTAGATTTATTGGATTTGAAGAAATTGAAACCTTTGATGTCTGTTAAAGATCAGCGGTCGAAATCGTGCTATCCTTTGGGATTGAGGGGATTGAATAACTTGGGGAATACTTGTTTTATGAACTCTGTTCTTCAAGTGTTTCTTCATACTCCGCCTTTGAGCAATTACTTCTTGAATGATCAGCACAACAGGGAAACCTGCAGCAAAAGACCCATTGGGCAGCTGTGTTTACCTTGTGACATTGATCGTATTTTTTCTGCTGTGTTTTCTGGTGATCATATGCCTTATAGCCCAGCTCAATTTCTTTACAGGTTAGAGAATGGTGACTGCAAATGCATTGCTCACAAGGCCTTCTCTGGGCAGTTGAGATCAGACGTGACCTGTATGACCTGTGGATTCACTTCAACAACTTATGATCCATGTGTGGATATTTCACTTGACTTGGACGCCCACGATTTCTCGTCTAGAAATATTGCTAGCAAGTCGACGAAGCCCGTGGATTCCAGCAGTAAATCTACGCTATCTGGTTGTTTGGATCTTTTTACGAGACCCGAAAAGCTGGGATCGGACCAGAAACTTTTCTGCCAGAATTGTCAAGAAATGAGAAGTTCAGTGAAGCAAATGTCTATCAGAAGGCTGCCATTGGTCTTGTGTTTGCATATCAAACGATTCGAGCACTCTTTTGTCAGACGAACGTCGAGAAAAATTGATCGGTATTTGCAGTTTCCGTTCTCCCTCGACATGATCCCGTATTTGTCGTCTTCGATTATCAGAAACAGATATGGGAATAGGATTTTTGCTTCTGAGGGTGACGAAATAGATGCTTCGTCGAAGTTTGAGATTTTCGCTGTGGTTTCTCATTCGGGGACGCTCGAGTCTGGTCATTATGTGACATACTTGCGTCTGAGAAGTCGATGGTATAAGTGCGACGATGCCTGGATCACCGAAGTCGATGAAGAAATGGTGAGAAATTCTCAGTGTTATATGATGTTTTATCTACAGAAAATACCAAACTACAAACCGAATGAGGATTTGAGCTGCCTTCCTATTTCCCCGCGCAACGATGCGTTCCAACAAATTGCTGGTTGCTGTTAA 1536 43.49 MFQRNPSYSNPTPCNHLADYKLRYGLNGYKSIQHHLKTTPNGRTSIQNPDSKLPRCGSCDGYEGRLYICLICASISCSNHTLLHNQSENGHDLAVDVERAELYCYACSDQVYDPDFDRTVMSKHIVAAVLEKSQSAERSSKRRRFGSLDLLDLKKLKPLMSVKDQRSKSCYPLGLRGLNNLGNTCFMNSVLQVFLHTPPLSNYFLNDQHNRETCSKRPIGQLCLPCDIDRIFSAVFSGDHMPYSPAQFLYRLENGDCKCIAHKAFSGQLRSDVTCMTCGFTSTTYDPCVDISLDLDAHDFSSRNIASKSTKPVDSSSKSTLSGCLDLFTRPEKLGSDQKLFCQNCQEMRSSVKQMSIRRLPLVLCLHIKRFEHSFVRRTSRKIDRYLQFPFSLDMIPYLSSSIIRNRYGNRIFASEGDEIDASSKFEIFAVVSHSGTLESGHYVTYLRLRSRWYKCDDAWITEVDEEMVRNSQCYMMFYLQKIPNYKPNEDLSCLPISPRNDAFQQIAGCC 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1910953 1913904 + Carg02827-RA Car09g00347 154084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00347 511 ProSiteProfiles Zinc finger UBP-type profile. 30 136 IPR001607 GO:0008270
Car09g00347 511 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 177 192 IPR018200 GO:0004843|GO:0006511
Car09g00347 511 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 176 482 IPR028889 -
Car09g00347 511 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Car09g00347 511 Pfam Ubiquitin carboxyl-terminal hydrolase 176 236 IPR001394 GO:0004843|GO:0016579
Car09g00347 511 Pfam Ubiquitin carboxyl-terminal hydrolase 257 479 IPR001394 GO:0004843|GO:0016579
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00347 K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] - csv:101210858 951.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01188 Car-Chr5:11244612 Car09g00347 Car-Chr9:1910953 2.42E-174 dispersed
Car09g00347 Car-Chr9:1910953 Car12g00769 Car-Chr12:7403975 4.87E-36 dispersed
Car09g00817 Car-Chr9:4955009 Car09g00347 Car-Chr9:1910953 4.52E-06 dispersed
Car09g00347 Car-Chr9:1910953 Car04g00597 Car-Chr4:3409660 3.84E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g597 Blo01g01420 . Bda01g00659 . . Bpe02g00532 . . . . . . Car09g00347 . . . . . . . . . . . Cla05g01666 Cam05g1780 Cec05g1786 Cco05g1846 Clacu05g1769 Cmu05g1653 Cre05g1782 . Cone7ag1656 . . Lsi04g01349 Csa03g04488 Chy04g00212 . . . . . . . . . Sed13g1952 . Cmo09g00400 . . . . . . Bhi09g03035 Tan01g3536 Cmetu07g1151 . Hepe01g1951 Mch11g0488 . . . . . . . . . . . Cme07g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012836 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00347 Car_Chr09 FPKM 6.053069 6.083862 7.298427 6.536589 9.438647 9.244061 9.812981 10.520065 10.550243 11.156736