Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00350 ATGGCGCTCTATCCCCGGTCTGTTCAATATCATTTACTCTATTCCCGGACTTGCCCTCGAGTTTCAGGTGATGCCACTGGTTGTGTTGCCCCTCCTGATCGTCCAAGGACGGATTGGACGCCAGAAATGGATCAGTATTTCATTGAGCTTATGCTAGATCAAGTAGGAAGAGGCAATAAGGTGTCTAATACATTCAATAAGCAAGCGTGGACGGATATGCTTGCACTGTTTAATGCTAAATTTGGTCCTCAACATGGTAAAAGGGTGTTACGACATCGATTTAAGAAATTATGGAAATATTACTGTGATATTATGAATCTACTTCAACAAAATGGATTTTGCTGGGATGAAGTACAACAAATGGTTGTGGCTGATGATGATATTTGGGATGCTTATGTCAAGATGCACCCGTTTGCACGAAGTTATAGAACGAAAGAGTTGCCGAACTACTATGACTTGGTTCTCATATATGGGAACGAGAATCAAATGGCAACTGTTAGCGACCGCACCCGAACATATTGGACGCCCCCAATGGATCGTTACCTCATAGACTTGCTACTTGAACAGGTGAATAGGGGCAATAAAATAGGCCAAACGTTTGTAAGTCATGCTTGGATCGACATGGTTACCACGTTCAATGCCCAATTCCGAGCTCACCATGACAAGGATGTGCTGAAAAATCGATACAAACATTTGAGAAGGCTGTATAATGAAATAAAGATTCTTCTCGAACAGAGAGGATTTTCATGGGATGAAAATCGTGAAATTGTTACTGCTGACGACCATGTTTGGGATGCTTATACTAAGGATCACCCTGTTGCCCGATCATATAGAGTTAAAACTGTACCAAGCTATCACAAGTTGTGTTTTATATTTGGTGAAGAGAGTTCCAACAGAAGATATAGCCGTTTGGCTCATGATACCGATCCGAGTAATGAAGTGCCTGTTCTTATGACTGATGAAAGGAAAAATGATCAGGTCCCTGCTGGACCTTCACCCATGATAGATTGGACACCACAGATGGATCGCGCTTTTATCGATCTTATGCTTGAACATTCGCAAGAAGGAAGTATGTTCGGCCAAGCGTTTAGCGAGCAAGCATGGAGTCACGTGATTATATCATTCAATGAGAGGTTCAAACTTCAATGTGGCCGATCTGTTCTAGAAGATCGTTATGTCTGGTGGATGAAGCAATACGGCGAAATCTACGATCTTCTCAATCACGGTGGGTTCACGTGGAATGAATCTCAACAATTGATTACTGCTGAGGATGATCTCTGGGAAGCCTATGGAAAGGAACGCCCCGATGCCCTCTTGTACAAAGACAAATTCCTAGGCTACTATACTGACTTGTGCAAGATTTTCGGAAACGTAATAGATAAAGAAGTCAACAGTCGGTATACAGGTGAAATCGATAACGAAAATTTGGAGATAAAGATGGATGGAAATGAAGAACACCTACTCCTAACATCAAGAGAGCTCCAAATTTCTCAGCAGAGAAAGCGTCCTGCAGAGATGATATCATTGGACACGGAGCTCTCGAAGAAAGTGCATAGAACTGAGAACGACGTGCAGAAAGCTCTGTCCGAGATGGCAGGTGTAGTCACTAGATTGGTGAGCATGAGACAGCACCATAACTATAAAGCAGGCGAAGGTGCCATCGATGCGCTTCAGGCTATACCCGACATCGATGATGAACTCATGTTGGATGCCTGTGATCTCTTAGAAGATGAAAGGAAGGCAAAAACATTTATGGCTTTGGATGCAACCCTGCGAAAGAAATGGTTACTAAGAAAGCTTCGTTCTCAATAG 1812 42.83 MALYPRSVQYHLLYSRTCPRVSGDATGCVAPPDRPRTDWTPEMDQYFIELMLDQVGRGNKVSNTFNKQAWTDMLALFNAKFGPQHGKRVLRHRFKKLWKYYCDIMNLLQQNGFCWDEVQQMVVADDDIWDAYVKMHPFARSYRTKELPNYYDLVLIYGNENQMATVSDRTRTYWTPPMDRYLIDLLLEQVNRGNKIGQTFVSHAWIDMVTTFNAQFRAHHDKDVLKNRYKHLRRLYNEIKILLEQRGFSWDENREIVTADDHVWDAYTKDHPVARSYRVKTVPSYHKLCFIFGEESSNRRYSRLAHDTDPSNEVPVLMTDERKNDQVPAGPSPMIDWTPQMDRAFIDLMLEHSQEGSMFGQAFSEQAWSHVIISFNERFKLQCGRSVLEDRYVWWMKQYGEIYDLLNHGGFTWNESQQLITAEDDLWEAYGKERPDALLYKDKFLGYYTDLCKIFGNVIDKEVNSRYTGEIDNENLEIKMDGNEEHLLLTSRELQISQQRKRPAEMISLDTELSKKVHRTENDVQKALSEMAGVVTRLVSMRQHHNYKAGEGAIDALQAIPDIDDELMLDACDLLEDERKAKTFMALDATLRKKWLLRKLRSQ 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1916932 1920074 + Carg02830-RA Car09g00350 154087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00350 603 Pfam Myb/SANT-like DNA-binding domain 39 132 IPR024752 -
Car09g00350 603 Pfam Myb/SANT-like DNA-binding domain 337 430 IPR024752 -
Car09g00350 603 Pfam Myb/SANT-like DNA-binding domain 173 267 IPR024752 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00350 - - - cmax:111477186 1147.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01030 Car-Chr5:9816871 Car09g00350 Car-Chr9:1916932 1.72E-75 dispersed
Car09g00350 Car-Chr9:1916932 Car10g00925 Car-Chr10:7075704 2.68E-64 dispersed
Car09g00349 Car-Chr9:1914866 Car09g00350 Car-Chr9:1916932 1.96E-30 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g595 . . . . Bpe02g01266 . . . . . . . Car09g00350 . . . Cpe06g00286 . . . . . . . Cla05g01667 Cam05g1782 Cec05g1788 Cco05g1847 Clacu05g1770 Cmu05g1655 Cre05g1784 Cone4ag1737 Cone7ag1657 Cone17ag0974 Cone20ag0315 . . . . . Blo18g00251 Bda01g01017 . . . . . . . Cmo09g00402 Cma09g00399 . . . . . Bhi09g03029 . . . . . . . . . . . . . . . . Cme07g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006000 1 7 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00350 Car_Chr09 FPKM 0.0 0.0 0.735784 0.0 0.0 0.0 0.0 1.311161 0.896107 0.0