Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00357 ATGCAGAGATTGAAAGCAGTGGAAGCTGTGAGGAGATCTTCATTTCAGCGTTTTAGCTCTTTTTCTAACCTGAAGAGAGGCTTTTCTTCTCTACCAAACTATGCTCAAACTGATGATGTTTTCGACCAGGCTAGTGGCAGGGCGTTTTGCTCCGGTGCAGATGTTATCGCGCCGTATCATTTCTCAAATGAAGATCCGGAAGCCATTGTCACCACTCTTTATTTGGATAAAGAAGAGAAATCATGGCTTAATGTTCCCGACCGGCCTAATGATTCTGTTGAGGTGGCCCTGTTGGACGGTATCATGATGAGAGGTGGGGCTGGGATTACCCTTCCAGGCATGTTCAAAGTGGTGACTGATGGAACTGCAACTGTGTGGTTAAGTGGAAGTTCTTGTTCTTCTGTTAGACACTATTCGCTCAATGCCAGACTTGGTGGAATTGAAGAACGCCTTGGTAAAATGATAACCGATGGCCCTTCTGTCATAGAATCATCTCTTGCTGCATTTGGTGATCTCGTCTATCCTCCGAAAGTGACCTCGTTTCGCCAGTTCAGGCTCCTGATAACAGGAGCGTTCTTTCCAAGTACTGTTCTTTCTTCTGCACCTTCCTCTTTGTTTAGATTAAGTCCTATAGCCTCTACGCTCGATGCAACAGCTAGGTGTTTTAGCCACGACACTGTTGAGGAAATTTTGGAAGCCTTGGAAAGAGAGGCTGCAGAGTCTTATGATGAATGGTATTCTTCAACCCTGAAGTTACTTTAG 762 45.14 MQRLKAVEAVRRSSFQRFSSFSNLKRGFSSLPNYAQTDDVFDQASGRAFCSGADVIAPYHFSNEDPEAIVTTLYLDKEEKSWLNVPDRPNDSVEVALLDGIMMRGGAGITLPGMFKVVTDGTATVWLSGSSCSSVRHYSLNARLGGIEERLGKMITDGPSVIESSLAAFGDLVYPPKVTSFRQFRLLITGAFFPSTVLSSAPSSLFRLSPIASTLDATARCFSHDTVEEILEALEREAAESYDEWYSSTLKLL 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1948557 1952961 + Carg02837-RA Car09g00357 154094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00357 253 Pfam Enoyl-CoA hydratase/isomerase 42 122 IPR045004 -
Car09g00357 253 Coils Coil 224 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00357 K05605 HIBCH; 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4] - csv:101212576 163.696
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01282 Car09g00357 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00357 Car-Chr9:1948557 Car10g00802 Car-Chr10:4380936 3.26E-11 dispersed
Car01g01282 Car-Chr1:11605627 Car09g00357 Car-Chr9:1948557 3.20E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g579 . Blo12g01051 . Bda03g00099 . . Bma04g00092 . . . Cma01g01668 . Car09g00357 . . . Cpe06g00293 . . . . . . . Cla05g01678 Cam05g1793 Cec05g1801 Cco05g1857 Clacu05g1780 Cmu05g1665 Cre05g1795 . . Cone17ag0981 Cone20ag0322 Lsi04g01339 . . . . . . . . Bpe04g00083 . . Sed05g1746 Cmo01g01717 . . . Car01g01282 . . Cpe02g00322 Bhi09g03011 Tan01g3558 Cmetu07g0567 . Hepe01g1963 Mch11g0500 . . . . . . . . . . . Cme07g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022209 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00357 Car_Chr09 FPKM 2.773639 2.828362 8.943057 8.998993 3.511986 1.828031 1.748218 13.998207 12.349011 13.395173