Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00364 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGGTTGCTTGGGAAGGGGACTTTTGCTAAGGTCTATTATGGAAAAGAATTGGAGTCTGGAGAAAGTGTAGCGATTAAGGTTTTAAACAAGGATCAGGTCAAGAAGGAAGGGATGATGGAGCAGATCAAGCGCGAGATCTCCGTTATGCGTCTTGTTCGTCATCCAAACATTGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAGCTTTTTGCCAAAGTTGCAAGAGGAAGACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGTGCCGTCGATTACTGTCATAGTCGTGGAGTTTCTCACCGCGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTCTACCGGAACAGCTTCGGAACGATGGTCTTCTCCACACGCAGTGCGGGACTCCGGCCTACGTCGCACCGGAAGTACTAAGAAGAAAGGGCTACGATGGAGCCAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTCTGTTAGCAGGATTCCTTCCGTTTCAGGATGAGAACATCATGACTATGTATAAGAAGGTTTTCAAGGCCGAATTTGAATGTCCGCCATGGTTCTCCGCTGAAGCGAAGCGTTTGATTTCAAAAATCCTCGTCGTAGATCCAGAAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGCAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAATTAGTCACAGCGAAAACAGAGGATTCCGATTCCGAGAGTCCAAAACTATCGACGCCAAAATTCTTCAATGCGTTCGAGTTCATATCGACGATGTCATCGGGATTCGATCTATCGAGCTTATTCGAAAACAAAAGGAAGACGGGATCCATTTTCACATCGAGATGCTCAGTGTCGACGATCATGGAGAAAATCGAGACGGTGGCGAAGAGACTGAGCTTCAAGGTCTCGGAAGTGAAAGACTTCAAGCTCCGGCTGCAAGGTCCGGGGGAGGGGCGAAAAGGAAAGCTATCTGTGACGGCGGAGGTGTTCGAAATAGCGCCGGAAGTTGCCATAGTCGAATTTTCAAAGTCGGCCGGGGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTTCGGCCGGCGTTGAAGGACATCGTTTGGACGTGGCAAGGTGATTGTGTCCCCACCGGTGACGGACGTCACGGCCAACTTGACGGCGACGGCTTTTTGTGA 1332 48.27 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDQVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGRLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAEAKRLISKILVVDPERRITIGAITRVPWFRKDFSRSLSFTMKELVTAKTEDSDSESPKLSTPKFFNAFEFISTMSSGFDLSSLFENKRKTGSIFTSRCSVSTIMEKIETVAKRLSFKVSEVKDFKLRLQGPGEGRKGKLSVTAEVFEIAPEVAIVEFSKSAGDTLEYSKFCEEDVRPALKDIVWTWQGDCVPTGDGRHGQLDGDGFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1988779 1990110 - Carg02844-RA Car09g00364 154101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00364 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Car09g00364 443 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00364 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Car09g00364 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00364 443 PANTHER - 1 430 - -
Car09g00364 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Car09g00364 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 430 - -
Car09g00364 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Car09g00364 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Car09g00364 443 CDD CIPK_C 302 416 - -
Car09g00364 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00364 443 CDD STKc_SnRK3 10 264 - -
Car09g00364 443 Pfam NAF domain 298 355 IPR004041 GO:0007165
Car09g00364 443 SUPERFAMILY Protein kinase-like (PK-like) 7 290 IPR011009 -
Car09g00364 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00364 Car-Chr9:1988779 Car13g00481 Car-Chr13:7049770 2.29E-178 dispersed
Car14g00954 Car-Chr14:5778599 Car09g00364 Car-Chr9:1988779 0 transposed
Car01g01275 Car-Chr1:11561646 Car09g00364 Car-Chr9:1988779 0 wgd
Car10g00439 Car-Chr10:2206179 Car09g00364 Car-Chr9:1988779 0 wgd
Car02g00850 Car-Chr2:6128779 Car09g00364 Car-Chr9:1988779 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89080 PF00069 Pkinase 2.60E-75 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00364 - - csv:101213773 827.78