Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00374 ATGTTTTGCAAAATTACTTTGATGTCGAAGAAGAAGAAGAGCGGAACCGTGCCGGTTTATTTGAATGTGTATGATTTAACGCCGATCAATGGCTATGCGTATTGGCTCGGTCTTGGGGTTTACCATTCCGGCGTGCAAGTTCATGGAGTTGAATATGCATTTGGAGCACATGAACGTGCAACTTCAGGGATATTTGAGGTAGAACCAAGACAATGTCCTGGTTTTACGTTTAGGAAATCAATTTGTATCGGAAGAACGAATCTAGATCAGAAAGATGTTCGCTCGTTTATGGAGAAAGTAGCCGAAGAGTACTCCGGGAACACTTATCATCTCATAACGAAAAATTGCAACCATTTTTGCAATGATGTATGCTTAAGGTTGGTAGGGAAACCAATCCCTAGCTGGGTTAACCGTCTTGCTCGACTTGGTCTTTTCTGCAACTGCGTTCTTCCAGCGAGTTTGCACGAGGCGAAGGTTCGGCAAGTACGCCCAGGAGATAAGCTCAACAACAATGGTGCAAAGAAGAAATTGAAAAGCCAACCAAGTAGGTATAATGATAAACCTTCTTCTGTTTCCAATCCTCCAGCTTCAACCGTCAAAGTAAGTAGACAAAAACGATGTATCCCGCCATCGTCAACGGTGATTCATTCTTCACCGTCCACAACCCAAGCTGTAAAGCTGTAA 684 43.27 MFCKITLMSKKKKSGTVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHERATSGIFEVEPRQCPGFTFRKSICIGRTNLDQKDVRSFMEKVAEEYSGNTYHLITKNCNHFCNDVCLRLVGKPIPSWVNRLARLGLFCNCVLPASLHEAKVRQVRPGDKLNNNGAKKKLKSQPSRYNDKPSSVSNPPASTVKVSRQKRCIPPSSTVIHSSPSTTQAVKL 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2052280 2055042 + Carg02854-RA Car09g00374 154111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00374 227 MobiDBLite consensus disorder prediction 174 227 - -
Car09g00374 227 MobiDBLite consensus disorder prediction 161 227 - -
Car09g00374 227 Pfam PPPDE putative peptidase domain 18 152 IPR008580 GO:0008233
Car09g00374 227 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00374 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - csv:101215693 390.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00152 Car-Chr1:777842 Car09g00374 Car-Chr9:2052280 1.05E-84 dispersed
Car09g00374 Car-Chr9:2052280 Car14g01213 Car-Chr14:10559543 2.01E-73 dispersed
Car17g00839 Car-Chr17:7144522 Car09g00374 Car-Chr9:2052280 1.46E-74 dispersed
Car12g00342 Car-Chr12:2154980 Car09g00374 Car-Chr9:2052280 5.22E-107 wgd
Car04g01250 Car-Chr4:7245539 Car09g00374 Car-Chr9:2052280 1.54E-130 wgd
Car08g00505 Car-Chr8:3181902 Car09g00374 Car-Chr9:2052280 5.36E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g527 . . Bda01g00759 . . . . . . . Cma01g01477 . Car09g00374 . Sed09g0886 . . Bhi04g00039 Tan02g2754 Cmetu02g2111 . Hepe10g0224 . Lcy13g1819 . . . . . . . . . . . . . . . . Blo18g00013 . . . . Bma01g01268 . Sed05g1728 Cmo01g01533 Cmo09g00429 . . . . . . Bhi09g02978 Tan01g3588 Cmetu07g0071 . Hepe01g1982 Mch11g0518 . . . . . . . . . . Chy03g01091 Cme07g00105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001862 3 2 2 1 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 6 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00374 Car_Chr09 FPKM 1.543897 1.836567 28.009027 31.449236 22.166294 20.762363 20.407665 3.072392 2.850883 1.962205