Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00379 ATGGCGTATCACAATCACCTCTCACAGGACCTTCCCCTCCACTTTTCTGACCACCAACAACACCACCAAAATCAGCCTCTCTCTGATACCTCTCTGCGTAACATTCTGCCGGACCAGCTTGCCGGCGGTCACTCCTCGCCGGACCCCAAGTCCCACCATCATCATCACCATCATCCGCTGCAGACAGCGCCGAATTGGCTCAACAACGCACTGCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCGTCACCACAGCCGCCGCAGCCGCAGCCGCCAATACCAATTTCCTCAACCTTCACACCACTGCATCGGATTCCACCGTCTCTCACTCCTCAAACCAATGGCTCTCCCGTCCGATCCTCCACCGCAACCATAGCGATGTAATCGACGATGTCACCGCCTCTGCCGGTGATGCTATGATCGGTGCCGCTACCGCCGCGCTCTCTCACGATTCCGGTGAGATGAAGAACGACGCTAATAGCGGCGATGGAATGAACAAGAGCGAGGGTATGGTGATGGAACCTAGCGCCGGTGGAGAGGGGGTTTTGAATTGGCATAATGCTCGTTATAAAGCCGAGATTCTCACTCATCCTCTTTACGAGCAGCTTCTCTCCGCTCATGTCGCTTGCCTTCGCATCGCAACACCCGTCGATCAATTACCGAGGATCGACGCCCAGCTCGCTCAATCTCAGAATGTCGTCGCTAAATACTCCGCTTTAACCCACACCGCTCCACCGCCCATGGTTGGCGATGACAAAGAGCTCGATCAATTCATGTCGTACAGTCCTGCTGTTTGGGTCGAGAAAATTTATGTTGTTTGCAGTGCAGCTGAGAAAAGGCTGCCCTGTCTGTGGTTTCTGGACTCTACGCATTATGTTCTTTTGCTTTGTTCTTTCAAAGAACAGCTCCAACAACATGTTCGTGTCCATGCAATGGAAGCTGTAATGGCTTGCTGGGACATTGAGCAGTCCCTTCAAAGCTTAACAGGAGTTTCGCCCGGTGAAGGTACGGGAGCAACAATGTCGGACGACGAAGACGACCAAGTCGACAGCGATGCAAATTTATTTGATGGGAGTTTAGAGGGTCCAGACACTATGGGATTTGGCCCTCTTATTCCAACAGAAAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAGCTGAAGCATGAGCTAAAATCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACGGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAGCTGAAACAGATAAACAATTGGTTCATCAACCAAAGGAAGCGAAACTGGCACAACAATCCTTCAATTGACCTTAATTTGAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGACTTGTTTCCAACAAAATCATGTTCTCAACACTTTGCTGCAGCAGCATATAAACCCCATACTGATTATTTTACGAGCATTGAAGGTATTCATTTTAAGCTTGCAAAACCAACGTACGTAGTTATTGCTTTGACCAAAGAAGTTAGGGATGAGAAAACGGGACGAGGACGGGGACAGGGATGGAGGAATATATGCTGTGTCGCGGGGGCACACGTAAAGATCGAAAACGTGCTTTCGACTTAA 1728 49.54 MAYHNHLSQDLPLHFSDHQQHHQNQPLSDTSLRNILPDQLAGGHSSPDPKSHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTVTTAAAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVTASAGDAMIGAATAALSHDSGEMKNDANSGDGMNKSEGMVMEPSAGGEGVLNWHNARYKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALTHTAPPPMVGDDKELDQFMSYSPAVWVEKIYVVCSAAEKRLPCLWFLDSTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKSGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHNNPSIDLNLKEVMQVKTAATVSNDLFPTKSCSQHFAAAAYKPHTDYFTSIEGIHFKLAKPTYVVIALTKEVRDEKTGRGRGQGWRNICCVAGAHVKIENVLST 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2088126 2092754 + Carg02859-RA Car09g00379 154116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00379 575 Pfam KNOX2 domain 293 332 IPR005541 GO:0003677|GO:0005634
Car09g00379 575 Pfam KNOX1 domain 193 234 IPR005540 GO:0003677|GO:0005634
Car09g00379 575 Pfam ELK domain 390 411 IPR005539 GO:0003677
Car09g00379 575 MobiDBLite consensus disorder prediction 37 62 - -
Car09g00379 575 ProSiteProfiles ELK domain profile. 390 410 IPR005539 GO:0003677
Car09g00379 575 Pfam Homeobox KN domain 430 469 IPR008422 GO:0003677|GO:0006355
Car09g00379 575 ProSiteProfiles 'Homeobox' domain profile. 410 473 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00379 Car-Chr9:2088126 Car15g01077 Car-Chr15:8459115 2.15E-102 dispersed
Car12g00335 Car-Chr12:2114504 Car09g00379 Car-Chr9:2088126 2.02E-170 wgd
Car04g01255 Car-Chr4:7284554 Car09g00379 Car-Chr9:2088126 1.21E-59 wgd
Car05g00310 Car-Chr5:1707821 Car09g00379 Car-Chr9:2088126 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4059 PF05920 Homeobox_KN 3.00E-17 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00379 - - bhj:120085761 801.201