Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00389 ATGTCGTTCTTTTCTGGTATCTTCCTCGGCGTTGTTGTCGGAGTTTTACTGATTATCGCTCTTGCTCGCGTCGGGAATATACGCGCCAAGCATCGCTCCGATTTGGCTAAGACTATTGCAGCATTTGCAAGGATGACGGCACAGGATTCGAGAAAAATTCTCCCCAAGGAGTTTTATCCGTCGTGGGTTGTATTTACGCAGCGACAAAAGTTAAATTGGCTCAATCATCAGCTAGATAAAATCTGGCCATATGTCGACGAGGCAGCATCGGAGCTGATAAGGAGCAATGTGGAGCCGATTCTCGAACAATTTCGACCGGCTGTACTATCTTCTTTGAAGTTCTCAAAGTTGACCCTTGGCACTGTCGCTCCACATTTTACAGGAATTGCTGTGCTTGAAGACGAGCTAGAACCTAATGGAATAACTTTGGAGTTGGAGATGCAGTGGGATGGTAATCCAAACATTGTTCTTGACATCAAAACTAAACTCGGCGTTTCTTTACCAGTACAGGTAAAAGATGTTGCATTCACAGGGCTTTTCAGATTAATATTCAAGCCATTGGTTGATGAGTTTCCTTGCTTTGGAGCATTGTGTTATTCTCTAAGGAAAAAGAAAAATCTTGATTTTAAGCTTAAGATTGTCGGTGGAGACATATCATCTATTCCTGGGGTTTCTGATGCTATTGAGGAAACAATCCGAGATGCTATTGAAGGTACCATAATGTGGCCGGTTCGGATGATTGTGCCCATCATAGCAGGAGATTATAGCGACTTAGAGGTAAAGCCTGTTGGAACATTAGAAGTGAAGCTCGTGCAGGCAAAGGAATTAACCAATAAAGACATTATAGGAAAGTCGGATCCTTATGCTGTGCTGTTTGTACGGCCATTGAAAGAGAGAATGAAAACAAGTAAAACCATTAATAATCAATTGAATCCAATATGGAATGAGCACTTTGATTTCATTGTTGAAGATGCATCTACTCAGCACTTGACTATAAGAGTTTTTGATGACGAGGGAGTTCAGGCATCTGAACTTATTGGCTGCGCTCAAGTAGCATTGAAGGACCTCGAGCCTGGTAAAGTGAAGGATGTTTGGTTGAAGCTGCTCAAAGATTTGGACATCCAAAGAGATAACAAAAACAGGGGTCAGGTGCATTTGGAGCTTCTTTACTATCCTTTCGGCACTGATCAGGGCCGCCATAAAAACCCATTTAACCCAGATTATGCATTGACCTCAGTGGAGAAGGTTCTAAAGACGGCTCCAACTGGCTCAGACGATGCAGGTTCTAGAAAACCAAGCTCCCCAAAGAAGAGGGATACGATTGTAAGAGGAGTGCTATCTGTGACAGTAATAGCTGCTGAAGATTTGCCTGCTGTAGATTACATGGGAAAAGCCGACCCTTATGTCGTACTGATTATGAAGAAATCCGAGACCAAGGTTAAAACGAGGGTTGTCCATGACACCCTGAATCCTGTCTGGAATCAAACGTTTGACTTTCTGGTGGAGGATGCATTACACGACATGCTAATGGTAGAGCTCTGGGATCATGACACTTTTGGAAAGGATAAACTGGGGAGGGTCATAATGACACTGACAAGAGCGATATTGGAAGGGGAAATTCAGGACTGTTATCCACTGGAAGGAGCAAAATCAGGGCGGATTTATCTGAATCTCAAGTGGGCAGCTCAGCCACTCTTCCGAGACAATTGA 1710 43.45 MSFFSGIFLGVVVGVLLIIALARVGNIRAKHRSDLAKTIAAFARMTAQDSRKILPKEFYPSWVVFTQRQKLNWLNHQLDKIWPYVDEAASELIRSNVEPILEQFRPAVLSSLKFSKLTLGTVAPHFTGIAVLEDELEPNGITLELEMQWDGNPNIVLDIKTKLGVSLPVQVKDVAFTGLFRLIFKPLVDEFPCFGALCYSLRKKKNLDFKLKIVGGDISSIPGVSDAIEETIRDAIEGTIMWPVRMIVPIIAGDYSDLEVKPVGTLEVKLVQAKELTNKDIIGKSDPYAVLFVRPLKERMKTSKTINNQLNPIWNEHFDFIVEDASTQHLTIRVFDDEGVQASELIGCAQVALKDLEPGKVKDVWLKLLKDLDIQRDNKNRGQVHLELLYYPFGTDQGRHKNPFNPDYALTSVEKVLKTAPTGSDDAGSRKPSSPKKRDTIVRGVLSVTVIAAEDLPAVDYMGKADPYVVLIMKKSETKVKTRVVHDTLNPVWNQTFDFLVEDALHDMLMVELWDHDTFGKDKLGRVIMTLTRAILEGEIQDCYPLEGAKSGRIYLNLKWAAQPLFRDN 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2145335 2150506 + Carg02869-RA Car09g00389 154126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00389 569 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 251 IPR039010 -
Car09g00389 569 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 251 IPR031468 GO:0008289
Car09g00389 569 ProSiteProfiles C2 domain profile. 426 544 IPR000008 -
Car09g00389 569 ProSiteProfiles C2 domain profile. 245 366 IPR000008 -
Car09g00389 569 Pfam C2 domain 264 368 IPR000008 -
Car09g00389 569 Pfam C2 domain 444 545 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00389 - - - csv:101210249 1033.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01095 Car-Chr1:10239396 Car09g00389 Car-Chr9:2145335 1.17E-06 dispersed
Car08g00830 Car-Chr8:5548838 Car09g00389 Car-Chr9:2145335 8.69E-11 dispersed
Car09g00389 Car-Chr9:2145335 Car17g00022 Car-Chr17:98433 1.54E-10 dispersed
Car11g00249 Car-Chr11:1389566 Car09g00389 Car-Chr9:2145335 6.76E-08 dispersed
Car19g00564 Car-Chr19:7138109 Car09g00389 Car-Chr9:2145335 1.55E-81 dispersed
Car12g01159 Car-Chr12:11160760 Car09g00389 Car-Chr9:2145335 0 wgd
Car04g01287 Car-Chr4:7452226 Car09g00389 Car-Chr9:2145335 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00389 Car_Chr09 FPKM 34.456478 38.280243 38.648331 39.918995 10.047006 9.03057 10.830202 52.453564 52.415504 53.802013