Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00401 ATGGGTTCTTCAAATTTTGGTGGTTTAATCTGTTTTTTGAGCTGGTTTTATCTGTTCATCTTGATTCAATGTGGAGTATCCTTAGCAAGTACTAGGAGTTTTGGGAACATTTCTCCAGGGTTTCAAGGCTCTCAGATGAACTGGATTGATAACGATGGCTTGTTTCTTATGTCCAATAACTCTAAATTTGGGTTTGGATTTGTGACTACTCAAGATGTTACAAGGTTTTCACTGGCTATCATCCACACAGGCAGCTTACGAGTTGTTTGGTCGGCCAATAGGGCCTCCCCTGTTCTTAATTCTGATAAGTTCACATTTGATGAGAAGGGAAATGCAATGTTGATGAAAGGTTCTTTGGTGGTTTGGTCTACAAATTCAAGTGACAAAGGGGTTTCGGCTTTGGAGCTGCAGAACTCGGGGAATTTGGTTTTACGAGCAAACGATAGCGATCGAGGTATCGTTTGGGAGAGTTTTAGCTATCCAACTGATACCCTTTTATCAGGGCAGGATTTTGTTGAAGGAATGAAACTTGTGAGTGATCTTAGCAACAATAACTTGAGCTATTCCCTTGAAATGATATCTGGTGATCTGATTCTATCAGCTGGCTTTCGATCTCCGCAGCCTTACTGGTCGATGGCTAAGGAGAATCGAAAAACCGTTAATCGGAACGGTGGAGCTGTTTCCTCGGCAAATCTTGATTCGAACTCTTGGAGGTTCTATGATCGAAACAATGTCTTGCTCTGGCAATTCATCTTCTCAAATAAAGTGAATGAAAATGGTACTTGGATTGCTGTTTTAGGAGACGATGGCTTTATCTCGTTCTATAATCTTCAAGATTCCGGTGCTGCGTCGAGTATTAGGATACCTGAAGACTCTTGTAGCACACCGGAGCCGTGTGGTTCGTATTTTATATGTTATAGTGGGAACCGATGCCAATGCCCTACTGTTCTTAGCTCGAATCCGAATTGTCAGCCTGGGATTGTGTCTCCTTGTGATCGTTCGAATGGAAGTATTGAGCTTGTAAGTACAGGGTTTAGCCTAAAGTATTTCGCGCTCGGATTCCTACCATCGACTTCGACGACTGATTTAGATGGTTGCAAGGAATCGTGCATGAGCAACTGTTCTTGTCGGGCGTTGTTCTTCGAAAACCGAACAGGGAAGTGTTTCTTGTTGGACGACGTAGGTGGGTTTCAAAATGCAAACGAAAACTATGACTTTGTTTCATACATCAAGATCTTGAACAATGTAGGTAGCAGTGACGACAATGATCGGACTAAAAATGGTGGAATGAACTCGCATATCGTGGCGATCATCGTTGTTTTTACAGTGTTCGTCATTTGTGGTCTAGTTTATTTGGCTTTTTGTTACTACAAGATGAAGAAGAAACCGCCCGGAACTCCTCATGAGACGTCCGAGGATGATAACTTCTTGAATGGTTTAACCGGGGCGCCGATTCGTTATAGCTACGACGATCTTCAAAGTGCAACCAATAACTTTTCGATGAAGCTTGGTCAAGGGGGATTTGGGTCGGTATATCAAGGAGCTCTACCGGACGGAACCCGGCTTGCCGTGAAGAAATTGGAGGCGATCGGTCAGGGGAAGAAGGAGTTTCGAGCCGAAGTGAGCATAATCGGTAGCATCCATCATGTTCACTTGGTTAGGCTCAAAGGCTATTGTGCTGAAGGGTCACACAAGCTTCTTGCTTATGAGTACATGGCTAATGGGTCATTGGACAAATGGATATTTAGGAAGAACAAAGAAGATTTTTTGTTAGATTGGAACACAAGGTTCAATATTGCATTAGGAACAGCTAAAGGATTAGCGTACCTACACGAAGATTGCGACGTGAAGATTATTCACTGTGATATCAAACCCGAAAACGTGCTTCTCGATGACAAGTTCCTTGCAAAAGTATCGGACTTCGGGCTTGCAAAGCTAATGACACACGAGCAAAGCCATGTTTTCACGACACTAAGAGGAACTCGAGGGTATCTAGCACCAGAGTGGATCACGAACTATGCTATATCAGAGAAGAGTGATGTTTATAGCTACGGGATGGTGTTGCTCGAGATAGTCGGGGGAAGAAAAAACTTCGACTCAACCGAAACCTCGGAAAAAGGCCATTTCCCATCATATGCTTTTAAAATGCTTGAAGAAGGAAGACTTGAAAACCTCCTTGATCCAAATTTGGTGATAAATGATGGTGATGAGAGAGTTTTTACAGCCATCAAAGTTGCTCTTTGGTGCATACAAGAAGATATGCACCTCAGGCCGCCGATGACTCGAGTAGTCCAAATGCTCGAAGGCCTTTGTGCCGTTCCTCCGCCTCCGACTTCCTCCCCGCTCGGTTCTCGCCTGTTTTCAAGCTTCTTCAAATCAGTCAGTGAGGGAGGAACCTCTTCCGGGCCTTCCGACTGCAACAGCGATGCATATCTTTCGGCGGTGAAGCTATCCGGGCCAAGATGA 2466 44.12 MGSSNFGGLICFLSWFYLFILIQCGVSLASTRSFGNISPGFQGSQMNWIDNDGLFLMSNNSKFGFGFVTTQDVTRFSLAIIHTGSLRVVWSANRASPVLNSDKFTFDEKGNAMLMKGSLVVWSTNSSDKGVSALELQNSGNLVLRANDSDRGIVWESFSYPTDTLLSGQDFVEGMKLVSDLSNNNLSYSLEMISGDLILSAGFRSPQPYWSMAKENRKTVNRNGGAVSSANLDSNSWRFYDRNNVLLWQFIFSNKVNENGTWIAVLGDDGFISFYNLQDSGAASSIRIPEDSCSTPEPCGSYFICYSGNRCQCPTVLSSNPNCQPGIVSPCDRSNGSIELVSTGFSLKYFALGFLPSTSTTDLDGCKESCMSNCSCRALFFENRTGKCFLLDDVGGFQNANENYDFVSYIKILNNVGSSDDNDRTKNGGMNSHIVAIIVVFTVFVICGLVYLAFCYYKMKKKPPGTPHETSEDDNFLNGLTGAPIRYSYDDLQSATNNFSMKLGQGGFGSVYQGALPDGTRLAVKKLEAIGQGKKEFRAEVSIIGSIHHVHLVRLKGYCAEGSHKLLAYEYMANGSLDKWIFRKNKEDFLLDWNTRFNIALGTAKGLAYLHEDCDVKIIHCDIKPENVLLDDKFLAKVSDFGLAKLMTHEQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIVGGRKNFDSTETSEKGHFPSYAFKMLEEGRLENLLDPNLVINDGDERVFTAIKVALWCIQEDMHLRPPMTRVVQMLEGLCAVPPPPTSSPLGSRLFSSFFKSVSEGGTSSGPSDCNSDAYLSAVKLSGPR 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2225257 2227722 + Carg02882-RA Car09g00401 154138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00401 821 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00401 821 ProSiteProfiles PAN/Apple domain profile. 331 411 IPR003609 -
Car09g00401 821 ProSiteProfiles Bulb-type lectin domain profile. 41 157 IPR001480 -
Car09g00401 821 Pfam D-mannose binding lectin 88 171 IPR001480 -
Car09g00401 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Car09g00401 821 Pfam Protein kinase domain 500 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00401 821 ProSitePatterns Protein kinases ATP-binding region signature. 503 526 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00401 - - - csv:101207644 1447.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car09g00401 Car12g00321 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00127 Car-Chr1:637421 Car09g00401 Car-Chr9:2225257 0 dispersed
Car07g01324 Car-Chr7:8279405 Car09g00401 Car-Chr9:2225257 1.24E-145 dispersed
Car09g00401 Car-Chr9:2225257 Car18g01206 Car-Chr18:11640558 6.41E-144 dispersed
Car10g00529 Car-Chr10:2648904 Car09g00401 Car-Chr9:2225257 4.63E-95 dispersed
Car14g00253 Car-Chr14:1184571 Car09g00401 Car-Chr9:2225257 1.19E-22 transposed
Car12g00321 Car-Chr12:2062608 Car09g00401 Car-Chr9:2225257 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89082 PF00069 Pkinase 2.00E-48 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00401 Car_Chr09 FPKM 59.748592 68.920128 72.06765 77.140991 48.630573 45.455387 49.392265 112.4478 104.496582 113.276764