Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00404 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTAATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGCAGAAGCCAGCCATGGGCATGGGCACGGATCTTCTCCAATGACCCCAAAAGCACTCTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCAGGCACTCGAGCCACCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGATACCATCCCCGTTGCCATCGCCCGAATCAACGAGCGAGGAACCCGATGGCCATCGGAACGGAATCGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAATTTCAAGCTAA 579 52.5 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSAEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSEEPDGHRNGIDEEDRIAMQMIEELLNWNCPLPSISS 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2243837 2244957 + Carg02885-RA Car09g00404 154141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00404 192 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Car09g00404 192 MobiDBLite consensus disorder prediction 143 165 - -
Car09g00404 192 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Car09g00404 192 MobiDBLite consensus disorder prediction 59 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01210 Car-Chr5:11426074 Car09g00404 Car-Chr9:2243837 4.09E-74 dispersed
Car09g00404 Car-Chr9:2243837 Car05g00303 Car-Chr5:1684311 9.48E-29 dispersed
Car11g00423 Car-Chr11:2374062 Car09g00404 Car-Chr9:2243837 5.47E-71 wgd
Car04g01272 Car-Chr4:7380535 Car09g00404 Car-Chr9:2243837 5.61E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4061 PF00847 AP2 3.90E-13 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00404 - - cmax:111476664 373.244