Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00406 ATGGCATTGATAGGAGAAGCACCGGGATTCCTTGAAGTATACTCTGATGGGTCAGTTCGACGCTTGATTCCTGAAGTCGTCGTCTCAACTGATAATCAATCATCTAAGAATTATAAGTTCAAGGACTTCGTTATTGACCCCAAAAAGCCAGTTACCGGAAGGTTGTTTCTTCCTAATGTTACTAATAATCATGTAGCAAAACTTCCTATTCTTGTTTACTTCCATGGTGGTGGCTTTTGCATTGGCTCAACTACTTGGATGGGTTACCATCACTTTCTTGGAGGCTTGGCTGTTGCATCTAAGTGTGTTATCTTGTCCATCGACTATCGATTGGCACCGGAGAATCGACTTCCAGCAGCTTATGAAGATTGCTACAGCTCACTTGAGTGGCTTGCCCATCAAGCAAGTTGTTTCGAGCCATGGTTGCAAAATGTTGATCTTTCTCGAGTCTTCCTATCCGGAGACAGTGCAGGAGGCAACATTGTCCACCATGTTGCAGTCAAAACCATGAAGACCAACATTACCAACATGACGCTCAAAGGATTGATGTTAATTCATCCGTATTTCGGGAGCGAGAAACGAACCGAGAAGGAGAAAGCAGAAGGGGTAGAAGGATTTGTGGAAATGAATGATATGTTTTGGAGATTGAGCATACCGAAAGGTAGCAACCGTGATTATTTCGGATGTAACTACGAGAATAATACACAAGAAATGAGTACAGAAGAATGGAGTAAGTTCCCAAATGTGGTGGTTTTTGTAGCTGGCTTGGATTTCTTGAAGGAAAGGGGAGAGTTATATGTAAACTTCTTGCAGCAAAAGAGGGTAAAAGTGGTTAAGCTTATAGAAGCTGTAGATGAGTCTCATGTATTTCATGTATTCCGTCCCGAATCCGAGTCCACCCGCTTGCTTCAAATGCAGATGACTCAATTCATGAACACCTTTAATTAA 948 42.19 MALIGEAPGFLEVYSDGSVRRLIPEVVVSTDNQSSKNYKFKDFVIDPKKPVTGRLFLPNVTNNHVAKLPILVYFHGGGFCIGSTTWMGYHHFLGGLAVASKCVILSIDYRLAPENRLPAAYEDCYSSLEWLAHQASCFEPWLQNVDLSRVFLSGDSAGGNIVHHVAVKTMKTNITNMTLKGLMLIHPYFGSEKRTEKEKAEGVEGFVEMNDMFWRLSIPKGSNRDYFGCNYENNTQEMSTEEWSKFPNVVVFVAGLDFLKERGELYVNFLQQKRVKVVKLIEAVDESHVFHVFRPESESTRLLQMQMTQFMNTFN 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2251647 2252594 + Carg02887-RA Car09g00406 154143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00406 315 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 150 162 IPR033140 -
Car09g00406 315 Pfam alpha/beta hydrolase fold 71 291 IPR013094 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00406 - - - cmos:111443123 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00406 Car-Chr9:2251647 Car18g00958 Car-Chr18:10174168 1.10E-53 dispersed
Car09g00406 Car-Chr9:2251647 Car04g01576 Car-Chr4:9133039 3.20E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g474 . . . . . . . . . . . . Car09g00406 . . . . . . . . . . . Cla05g01743 Cam05g1856 Cec05g1868 Cco05g1931 Clacu05g1847 Cmu05g1728 Cre05g1860 . . . . Lsi04g02135 . . . . . . . . . . . Sed13g2029 . Cmo09g00472 Cma09g00463 . . . . . Bhi09g02251 Tan01g3655 . . Hepe01g2028 Mch11g0562 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013730 1 1 0 2 1 1 1 1 1 0 1 1 1 0 0 0 1 0 0 1 0 1 1 1 1 1 1 1 1 3 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00406 Car_Chr09 FPKM 14.885045 15.048834 2.585031 3.006469 12.255024 14.490267 14.79587 1.866385 2.098474 2.381777