Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00415 ATGGGATTATTAGGGAGATCGATGTGCGGGAGAGAGGATCAACGAGAGCTTGAGCACTTATCGAGAGACGACGGCAGCCAATACAGCCTCACGGGCGGAATCCTGCCGCCGCTTGGCGTGAATGGGCGAAATAATCGAAGAAGCAAACTCGGTCCTCATATAATCTCGCCGTTCGATTACAATTACAGATTTTGGGAGACGTTTCTGATTTTCTTGGTACTCTACACAGCCTGGGCATGTCCGTTTGAGTTCGGGTTTCTCCCTTCGCCCAGCGGAGTTCTGGCAATAATTGACAATATCGTAAATGGACTTTTCGCCATTGATATAGTTCTGACATTCTTCGTGGCGTATTTGGACAAAACGACTTACCTGCTGGTGGATGACCGGAAGCTGATTGCTCTACGGTATGCCAAAACCTGGTTGGTCCTCGACGTTGTGTCCAATATTCCGTCGGAGATGGCTCGCAATATTCTCCCTCCTTCCCTTCAGGTTTATGGCTACTTCAACATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGCTCCATGTTCGCCAGGTTGGAAAAAGACAGGAACTACAACTATTTCTGGGTTCGATCTGCAAAGCTTATGTTTGTGTGTCTGTTCACAGTTCATTTTGCTGGCTGCTGCTTCTATCTAATTGATTCAAACTATAAGGACCCCAAAAGAACATGGTCGACCTTATACATGGAAGACTTCCATAATGAAAGTTTGTGGGTGCGTTATGTGACTTCCATTTACTGGTCAATTGTCACAATCACCACCACTGGCTATGGCGATTTGCATCCAATCAATGATCAAGAGATGTCATTTGTCATTTGTTATCTGTTCTTCATTCTGGGGTTGCAATCTTACCTGATTGGAAATATGACAAACTTGGTCGTCCATGGCACGAGTCGAACCAGGCAATTTAGAGACACCATTCAAGCTGCCTCAAATTTCGCCCAAAGAAATCAACTGCCTGGTCGGCTGCAAGAACAGATGCTAGCTCATCTGTGTTTGAAATTCAGGATTGATTCAGAGGGTTTACAACAGCAAGAGACAATTGATTCTCTTCCAAAAGCCATTAGATCCGGCATCGCACACCATCTCTTCTATTCACTCGTTGATAGTGCTTATTTGTTCAATGGGGTGTCAACCGACTTGATCTTTCAACTGGTGACAGAAATGAAGGCTGAGTACTTTCCTCCCAAAGAAGATATCATCTTGCAGAATGAAGCACCAACAGATTTCTATATAGTTGTCACTGGCACTGCGGATCTTATTGTACAAAGAAATGGAATAGAAGAGATCGTCGGAGAAGCAAAGACAGGAGATGTCATTGGTGAGATTGGCGTGCTTTGTTATCAACCACAACTGTTTACAGTTCGAACCAGCCGTTTGAGTCAACTGTTGCGATTGAATCGCTCTTCGTTTTTCAACTTAGTACAAGCTAGCGTTGGGGATGGGACAATAATAATGAACAATCTCCTTAAGCACCTGAAGGAGGTAAAAGACCCAATGATGGAGGAAATTCTGCAAGAAACAGAACAGTCCTTGATTCGTGCTGGAATGGAAATGCCTCTCAATTTATACTTTGCGGCAAGCAGTGGCGATGACTTATTGTTGCATCAGTTGCTAAAGCGTGGTTCAAACCCAAATGAAGTAGATGAGGGTAGCGGGAAGACAGCACTTCATATTGCAGCTGCTAAAGGAAACGAACACTGCGTAGTTCTACTCCTAGAGTATGGGGCAGATCCGAACCGAAGAGACTTTGAAGGAAGCCTACCCTTGTGGCAAGCAATACAAGGAAATCATGAGCCTATAGTCAAGCTTCTAATAGACAATGGTGCCGATATTTCTTCAGGAGACGTCGCCCAGTTTGCATGCACCGCTGTGGAGCAAAACAACATAGATATGCTCACATCCATCATCGAATGTGGTGGAGATGTAACTCTGCCTAGAAGCAACGGGACTACAGCTCTTCACACGGCAGTATGTGAAGGAAACAGTGAAATGGTTAAGTTCCTTTTAGAGCATGGGGCTGACATTGATAAGGCAGATGTTCATGGATGGACTCCACGAGCGTTAGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTCTTAAGCAAGCTGTGAATAAATCATCTGTTGTCCATATTCCACAAAATCCCGAATCAAATTATCTACGGAAGTTCCAGAGCGAGTCGATCATACCGCGGTTTTCCCATGACTCCTGCATGACTCCTGTTCGAGAATCAAATTGTTCTGATATGCCTCCTAGAAGGAGAAGGAGCAATAATTATCGAAACTCGCTCGTTGGGTTCATGGAAAATACCAATAAGGGTGAAAGGGACGTTCTACAATCCGCATTGCTCGGTTTTAGCAATAGCCGAAGCGTGAGATCGGCTTACCAGGCAAGAGTTGTTCTCAGTTGCCCTGAGAAAGGACAAGTCATTGGAAAGCTTGTGCTTTTACCCAAAACCATCCAAGAACTAGTTGAAACTGGTTCCAAAAAATTTGGGATTTCTGCAACAATGATTTTAACTCATGAAGGAGCTGAAGTTGAGGATATAGACCTTGTCAGAGACGGTGATCACCTCATTCTTGTCGGTGATGCCAGTGCCACCGTCCCGAGTGGCCAAGTACGGTAG 2661 44.76 MGLLGRSMCGREDQRELEHLSRDDGSQYSLTGGILPPLGVNGRNNRRSKLGPHIISPFDYNYRFWETFLIFLVLYTAWACPFEFGFLPSPSGVLAIIDNIVNGLFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKTWLVLDVVSNIPSEMARNILPPSLQVYGYFNMLRLWRLRRVSSMFARLEKDRNYNYFWVRSAKLMFVCLFTVHFAGCCFYLIDSNYKDPKRTWSTLYMEDFHNESLWVRYVTSIYWSIVTITTTGYGDLHPINDQEMSFVICYLFFILGLQSYLIGNMTNLVVHGTSRTRQFRDTIQAASNFAQRNQLPGRLQEQMLAHLCLKFRIDSEGLQQQETIDSLPKAIRSGIAHHLFYSLVDSAYLFNGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYIVVTGTADLIVQRNGIEEIVGEAKTGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEVKDPMMEEILQETEQSLIRAGMEMPLNLYFAASSGDDLLLHQLLKRGSNPNEVDEGSGKTALHIAAAKGNEHCVVLLLEYGADPNRRDFEGSLPLWQAIQGNHEPIVKLLIDNGADISSGDVAQFACTAVEQNNIDMLTSIIECGGDVTLPRSNGTTALHTAVCEGNSEMVKFLLEHGADIDKADVHGWTPRALADHQGHEEIKELFSLKQAVNKSSVVHIPQNPESNYLRKFQSESIIPRFSHDSCMTPVRESNCSDMPPRRRRSNNYRNSLVGFMENTNKGERDVLQSALLGFSNSRSVRSAYQARVVLSCPEKGQVIGKLVLLPKTIQELVETGSKKFGISATMILTHEGAEVEDIDLVRDGDHLILVGDASATVPSGQVR 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2299197 2304669 + Carg02896-RA Car09g00415 154152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00415 886 Pfam KHA, dimerisation domain of potassium ion channel 810 872 IPR021789 -
Car09g00415 886 Pfam Ion transport protein 63 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car09g00415 886 ProSiteProfiles Ankyrin repeat profile. 656 688 IPR002110 GO:0005515
Car09g00415 886 Pfam Ankyrin repeats (3 copies) 530 621 IPR002110 GO:0005515
Car09g00415 886 Pfam Ankyrin repeats (3 copies) 631 709 IPR002110 GO:0005515
Car09g00415 886 ProSiteProfiles KHA domain profile. 810 886 IPR021789 -
Car09g00415 886 ProSiteProfiles Ankyrin repeat region circular profile. 656 687 - -
Car09g00415 886 ProSiteProfiles cAMP/cGMP binding motif profile. 380 482 IPR000595 -
Car09g00415 886 Pfam Cyclic nucleotide-binding domain 400 484 IPR000595 -
Car09g00415 886 ProSiteProfiles Ankyrin repeat profile. 559 591 IPR002110 GO:0005515
Car09g00415 886 ProSiteProfiles Ankyrin repeat region circular profile. 592 623 - -
Car09g00415 886 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Car09g00415 886 ProSiteProfiles Ankyrin repeat region circular profile. 559 590 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01171 Car09g00415 CCT
Car01g01171 Car09g00415 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00415 Car-Chr9:2299197 Car10g00536 Car-Chr10:2688737 0 dispersed
Car04g02857 Car-Chr4:21644981 Car09g00415 Car-Chr9:2299197 1.14E-10 transposed
Car11g00432 Car-Chr11:2414856 Car09g00415 Car-Chr9:2299197 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00415 K21867 - csv:101217334 1366.67