Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00417 ATGGCTGGTCAGGGCGCCGATTCCAATGCTGGCTACTGCAGCAATGGTGAGGAGAAGAGTACGAGACAGGTTCAACAGCTAGAAAATCAGGTGGGAGATTATCTTGAAGGAGTTCCATTCTACAGTCCGAGGAATGAAATTTCTGGACCTGAAAGTAGAAACCGAATAGCAGGGATCAAACGAAGTAATCCAGATTCTGCTTTCATGGAGTCATATAGAAACCAAATTCCTCATATTCTACAAAACGGAGCTGGTGGAGATCGACCAAGATACAACGATAATGATGCGGTTTACAGTATGCAGCCACCAAGAATTGCTTCTTCTTCACTCACACAACTCTCTCTTGGCACTAGATCTAATCCTAGCGTTTCCAAATGGGAGAGGCCTATTCCGTTGAACATGAGTTTTGCACCAAATTCTCCACTTGGGAGTCAGTATGTGCCGCGTGTTCATCAAGTAGCTTCCAATTCTTCCAGAGATTTTAATGTTTCTCCTTCCAGTATTTCTCAGTCTGCTGCTGATGAAGGATCTAGAACTGGGATGAAAACCCCTGGACTTCTAAGTAGCTTTAATGGCGGACACGATGGGATGCACTCATATAAGATGTTGCTAGGTTGTGACAAGCAGAAAACCAAGACTGAAGGTTTAGCATACAAATCTTCGAACCCTCCAAGTCAGCAGGGTGTTGATTCTAACAACAGACAGATGACTATTTTCTATGGTGGTCAAGCTCATGTTTTTGACGATGTCCATCCAAACAAGGCTGATATAATAATGGCCTTAGCAGGATCAAATGGGGGATCTTGGTCAACAACCTTGGCACCTAAACTGAATGTAACTGGGATATCTAGTGACCAGGAATCAGCTCATGGAAAGTTATTTCATAGTTTGATATCCACCAGTCGAGGAGTCAGGCGATACTCCTATCTCGACGCAAGCAGCTGTTGGTGA 951 44.06 MAGQGADSNAGYCSNGEEKSTRQVQQLENQVGDYLEGVPFYSPRNEISGPESRNRIAGIKRSNPDSAFMESYRNQIPHILQNGAGGDRPRYNDNDAVYSMQPPRIASSSLTQLSLGTRSNPSVSKWERPIPLNMSFAPNSPLGSQYVPRVHQVASNSSRDFNVSPSSISQSAADEGSRTGMKTPGLLSSFNGGHDGMHSYKMLLGCDKQKTKTEGLAYKSSNPPSQQGVDSNNRQMTIFYGGQAHVFDDVHPNKADIIMALAGSNGGSWSTTLAPKLNVTGISSDQESAHGKLFHSLISTSRGVRRYSYLDASSCW 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2308096 2312012 - Carg02898-RA Car09g00417 154154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00417 316 Pfam tify domain 232 263 IPR010399 -
Car09g00417 316 MobiDBLite consensus disorder prediction 8 29 - -
Car09g00417 316 MobiDBLite consensus disorder prediction 157 183 - -
Car09g00417 316 MobiDBLite consensus disorder prediction 1 29 - -
Car09g00417 316 ProSiteProfiles Tify domain profile. 229 264 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00417 - - - cmos:111443130 605.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00596 Car-Chr5:3470877 Car09g00417 Car-Chr9:2308096 1.01E-25 dispersed
Car12g00291 Car-Chr12:1908646 Car09g00417 Car-Chr9:2308096 2.13E-58 wgd
Car04g01294 Car-Chr4:7486761 Car09g00417 Car-Chr9:2308096 6.13E-154 wgd
Car05g00595 Car-Chr5:3468882 Car09g00417 Car-Chr9:2308096 1.47E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g432 . . . . . . . . Cmo05g00678 . . Cma05g00647 Car09g00417 . . . Cpe06g00353 . . . . . . . Cla05g01757 Cam05g1871 Cec05g1884 Cco05g1947 Clacu05g1863 Cmu05g1744 Cre05g1874 . . . . . Csa03g04357 . . . . . . . . . . . . Cmo09g00481 Cma09g00475 . . . Cpe11g00571 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001357 2 5 2 1 0 2 5 2 2 2 2 2 4 2 2 5 2 2 4 2 2 1 2 2 2 2 1 7 3 1 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4063 PF06200 tify 1.60E-14 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00417 Car_Chr09 FPKM 5.057693 5.743866 0.143759 0.407034 6.637744 6.08283 6.918861 0.0 0.0 0.09826