Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00418 ATGAGTATCGTAAACGTTAGTTTTCAAGTTGAAGATCGCTCTGGTAGAATCACGAGAGCACGGGCAAAAGAATTAAGCGAATCAGGAGACGTTCCATGCTCCTCAAAATCTTCTGGAGTTCAGAAGCATATTGTACGAGCTAACTCAAAAAGAGTGGCATCTGATGATATTAATATTTGTTCAATTTCTTCCAGTGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGGTTCTGATAAGAATTGCAGAAATGCTTCTAATATTCAGGGTGACAAACCAACTAGAAGAATTTCTGCTAAAGCTAAGGCAAATGCGCCTTTAAATGCTCCTGTAGAAATTCTAGGAGCAGAAGAAGATGAAAACACAAGATTAGCTGAGGACTTATCTAAAATAAGGGTGGTAGAATCGCGAGAGGTCTCTTTAAGAGAAACTCTTTGTCACACCAGCGGAGAATGTGGAGTTTTAGATATGGTTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCGAATGAAAAATATATGGCATCTGAACAATCGGCAGCATCAAGTGATACAGGTGTTATAGACATTGATTCAAACACCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGAATACGTGTGACGGAGCTTGATCAGAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAGACATGCGAGGAATACTGGTTGATTGGCTTATAGAGGTTTCTGACGAATACAAGTTGGTTCCAGATACACTCTACCTCACTGTGAATGTTATTGATCGGTTTCTCTCTCGAAATTGTATTGAAAGAAAGCGTCTCCAGCTTCTCGGTGTTGCAAGCATGCTAATTGCATCAAAATATGAGGAGATCTGTGCGCCAGGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAAGAGAGGTGGTAGAAATGGAGAGTAAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTCATACAATCGGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCACTGATCGCCGCATCCGCCGTTTTTCTTGCAAGATGGACACTCGACCAATCGGATCATCCCTGGAATCCAACTCTGGAGCACTATACATGTTACAACGCTTCTGAGCTGAAGACTGTTGTGCTTGCCCTCCAAGACTTGCAACTTAACGCCAGTGCTTCCTCCTTAAATGCCATACGTCAGAAGTATAGACAACCAAAGGTAATAACAATAACAAAAAAATCTCTATTTTTGTTCTGTTTTGAGACTGTTGGATCATAA 1431 40.53 MSIVNVSFQVEDRSGRITRARAKELSESGDVPCSSKSSGVQKHIVRANSKRVASDDINICSISSSGLPNKRRAVLKDVTNISTKGSDKNCRNASNIQGDKPTRRISAKAKANAPLNAPVEILGAEEDENTRLAEDLSKIRVVESREVSLRETLCHTSGECGVLDMVLSVSSEESIPQPNEKYMASEQSAASSDTGVIDIDSNTKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITADMRGILVDWLIEVSDEYKLVPDTLYLTVNVIDRFLSRNCIERKRLQLLGVASMLIASKYEEICAPGVEDFCFITDNTYTKREVVEMESKVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTCYNASELKTVVLALQDLQLNASASSLNAIRQKYRQPKVITITKKSLFLFCFETVGS 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2316309 2320133 + Carg02899-RA Car09g00418 154155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00418 476 Pfam Cyclin, C-terminal domain 344 460 IPR004367 -
Car09g00418 476 Pfam Cyclin, N-terminal domain 215 342 IPR006671 -
Car09g00418 476 ProSitePatterns Cyclins signature. 246 277 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00418 Car-Chr9:2316309 Car17g00774 Car-Chr17:6828462 1.26E-136 dispersed
Car12g00289 Car-Chr12:1889539 Car09g00418 Car-Chr9:2316309 1.43E-129 wgd
Car04g01296 Car-Chr4:7500349 Car09g00418 Car-Chr9:2316309 0 wgd
Car08g00540 Car-Chr8:3380090 Car09g00418 Car-Chr9:2316309 2.29E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00418 K06627 - csv:101204275 765.763