Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00436 ATGTCCGCTTCATCCGAAACTCCGATCGATGAGCCCCTGTCTGCTGGTGACGAAGCATCTAAAGCTGTCAGCAAGAAGGCCGCCAAGAAGGAGGCTGCCAAGCTGGAAAAGTTGCGCCGTCGCCAGGAAGCTGCCGCTGAAGCTGCTATTTCGTCTCTCAATGTCGAGGACGACCCACTCTCCGCTAACTATGGCGATGTACCTCTCTCCGATCTCCAATCCAAGGAGGCTAAGGATGTCGCGAACTGGACTCAGGTCGGCTCTTTGACGGGGGAGCTTAAGGAGAAGTATGTGATTCTACGTGGACGAATTCAGACGATCCGTGCTGTTGCCAAGAAGATGGCGTTTCTCGTGGTGAGAGAAAAGGGATTCACCGTGCAGTGCGTTGTATCGGAGCAGCCGGAACTCGTCAGTCGCCAGATGGTGAAGTATGTCGTTGGATTGAGCCGTGAATCCATTGTCGACGTTGAAGGAGTCGTGTCTGTGCCCAATGTTGCCATTAAAGGTGCTACGCAGCAGGTGGAGATTCAAGTGAGGAAAGTATACTGCATCAGTAAGGCAATGCCGAGTCTGCCTATAAATATTGAGGATGCTGCTCGTAGTGAAGCTGAGATTGAAAAAGCGTTGCAGGCTGGTGAGCAACTAGTACGTGTAAATCAGGATACGCGGTTGAACTACAGAGTTCTTGACATGCGAACTCCAGCTAATCAAGGAATTTTTCGCATTCAATGTCAAGTTGGAACAATATTTCGACAATTTCTGTTGTCCGAAGGCTTTGTTGAAATCCATACACCAAAATTGATTGGGGGTTCCAGTGAAGGTGGTGCTTCTGTATTTAGGTTGGACTACAAAGGTCAACCCGCTTGCCTGGCTCAGTCACCTCAGCTTCATAAGCAAATGTCAATCTGCGGCGACTTCGGCCGTGTATTTGAAATTGGTCCTGTTTTCAGAGCAGAGGACTCATTCACACATAGACATTTATGTGAATTTACAGGACTTGATGTTGAAATGGAGATCAAAACCCATTATTCTGAGGTCATGGACATCGTGGACCGATTATTTGTCTCAATGTTCGACAGTATGAATCAAAACTGTAAGAAGGAGCTTGAAGCAATTGATAAACAGTATCCCTTTGAGCCTTTGAAGTACTTGCGAAACACTCTACGCCTTACATTTGAGGAAGGAATTCAGATGTTGAAGGATGCTGGCGTTGAAATCGATCCTCTCGGGGATCTTAATACAGAGGCTGAGAGGAAATTGGGACGACTCGTCCTAGAGAAGTAA 1284 47.43 MSASSETPIDEPLSAGDEASKAVSKKAAKKEAAKLEKLRRRQEAAAEAAISSLNVEDDPLSANYGDVPLSDLQSKEAKDVANWTQVGSLTGELKEKYVILRGRIQTIRAVAKKMAFLVVREKGFTVQCVVSEQPELVSRQMVKYVVGLSRESIVDVEGVVSVPNVAIKGATQQVEIQVRKVYCISKAMPSLPINIEDAARSEAEIEKALQAGEQLVRVNQDTRLNYRVLDMRTPANQGIFRIQCQVGTIFRQFLLSEGFVEIHTPKLIGGSSEGGASVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKTHYSEVMDIVDRLFVSMFDSMNQNCKKELEAIDKQYPFEPLKYLRNTLRLTFEEGIQMLKDAGVEIDPLGDLNTEAERKLGRLVLEK 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2442787 2446076 + Carg02917-RA Car09g00436 154173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00436 427 Pfam tRNA synthetases class II (D, K and N) 220 404 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car09g00436 427 Coils Coil 25 48 - -
Car09g00436 427 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 240 427 IPR006195 -
Car09g00436 427 MobiDBLite consensus disorder prediction 1 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00436 K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] - csv:101222217 747.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00401 Car-Chr4:2277843 Car09g00436 Car-Chr9:2442787 2.36E-16 dispersed
Car09g00436 Car-Chr9:2442787 Car16g00268 Car-Chr16:1676790 3.94E-15 dispersed
Car01g01173 Car-Chr1:10954618 Car09g00436 Car-Chr9:2442787 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00436 Car_Chr09 FPKM 5.597919 4.512525 67.462524 62.575176 4.016809 4.703919 4.272293 25.16926 21.216106 23.805473