Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00448 ACATCCAGCCGATGGGGAAAATGTGTAGAAGAAGAGGAGCCTGAATTTGAAGCTGGAGAGAAGACACCTGAGGCTAAGGAAGGAACAAAGGGGCACAAGCTTTGGCGATGCCCGATCTGCACTTACGACAATGAAGACAGTTTTACTGCTTGTGATATATGTGGAGTTCTGCGCATCCCTTTGGTCAACGACAGAAATAATCGCGATGATGGAACAGTTGAGAACATTTGCAAAGATTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTCACCAAATCAGATACCCAAAAGGGAAGTAAAATTTCAAGAGCAGAACGATAAATTTTTGGAGGAAAGAGAAGATAACATCCTCAAGATTGGGAATATCCGGGGCCATTTGCATGAAGTCCATAATGCTTCTAGTACCTATAGTCATGTCCGTACTAATATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAAGGGATTGCGTTCCTCCAAAGTTGATTTAAAAGTCAGCCACAACGACTTCAACTCTTCAATATTATCTTCAGACGTCACTAAGAAGTGTGAAAATAATGAAGTATTGGCTTCAAAAGGTGCACATAGCTCGTCTGCTGTATTGCCGACGGGCAAATTAGGCAGTGTAGGAAATACACAGTTGAGTACCAAAAGTTCAGACAACTGGGGCACAACAATTGGAAAAAGTACAGTGGTTACTGAAGAGCACAATACGTCAATTAGTGTAACGAAAAATTCACGATCACGTGATAACAGGTCATCAAGCACTTCCACATCAAAATCAGCAGGCAAATTTGACAGCATGGATGAGAGCAGTAACCCTTCTGTGGAGCGGGAAAAGCCCCAAAGTCTTGCCGGTAGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAAATGTGCCTTACAAGGTTGATAAATGGATGCTACCTGATAAAGCTGTAGATACTTTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTTTGCACTTACTGGGACGTGTATCCCAGAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCCTTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTCGGTGTCGCTTATTTCGACTCTAAAAGATATCATGTAGTTGTACTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCCGCAGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAAGCCGGTATGGACAGCTCAAAGGGGCAAACAAGAGAACATGTGCAGTTAATCAGGAGCTTTGGCGTAGATCAGATAATTGTTGCCGTTAACAAAATGGATGTAGTGGAGTATTCCAAAGATCGCTACGACTTCATTAAACTGCAGCTTGGAACCTTTTTTCGTTCTTGTGGTTTTAAAGATTCATCGTTGACTTGGATTCCGTTGAGTGCCATGGCAAATCAGAATCTGGTGAACGCCCCTTCTGATGCTCAATTGTTGTCCTGGTATCGTGGACCTAATCTATTGGAGGCAATCGATTCCCTTCAACCACCCGCTAGAGATTTCTCTAAGCCGCTGCTTATGCCGATATGTGATGTAGTTAGATCGCTTTCACTAGGACAAGTGTCTGCCATTGGCAAGCTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAATCATGCCATCTGGAGATAAAGGCACCGTGCGCACTTTAGAACGCAATTCTCAAGCTTGCAAAATTGCAAGAGCGGGGGACAATGTGACTGTTAGTCTACAAGGAGTTGATGCAAGTAGCGTGATGGCTGGGGGCGTCCTATGTCATCCTGATTTTCCCGTTGCTATTGCAAAACATTTGGAATTGAAGATTCTAACCTTGGAACTTGCAACTCCAATATTAATAGGATCTCAGTTGGAAGTTCATATACAACATGTGAAGGAGGCTGCTAGAGTTGCAAGGATAGTGTCGTTGCTTGATTCGAAGACGGGAAAGGTCACGAAGAAGGCACCGCGTGTTCTAAGTGCTAAACAGAGCGCAGTGATTGAGGTTATTTTACAAAGCCCAGTTTGTGTCGAAGCATTCTCAACTAGTCGAGCTCTCGGGCGAGTATTTCTGAGAGCAATGGGCAGAACCATAGCCGTCGGCATTGTAACCCAACTAATTGGAGACCCGGAATGA 2307 43.48 TSSRWGKCVEEEEPEFEAGEKTPEAKEGTKGHKLWRCPICTYDNEDSFTACDICGVLRIPLVNDRNNRDDGTVENICKDSGVSKMAKSLFASSPNQIPKREVKFQEQNDKFLEEREDNILKIGNIRGHLHEVHNASSTYSHVRTNIVPFKFDIPSPDDVVSKGLRSSKVDLKVSHNDFNSSILSSDVTKKCENNEVLASKGAHSSSAVLPTGKLGSVGNTQLSTKSSDNWGTTIGKSTVVTEEHNTSISVTKNSRSRDNRSSSTSTSKSAGKFDSMDESSNPSVEREKPQSLAGSLNNMVLNVKSAYANYISGLGKTSNVPYKVDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNMISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYDFIKLQLGTFFRSCGFKDSSLTWIPLSAMANQNLVNAPSDAQLLSWYRGPNLLEAIDSLQPPARDFSKPLLMPICDVVRSLSLGQVSAIGKLEAGALQSGSKVLIMPSGDKGTVRTLERNSQACKIARAGDNVTVSLQGVDASSVMAGGVLCHPDFPVAIAKHLELKILTLELATPILIGSQLEVHIQHVKEAARVARIVSLLDSKTGKVTKKAPRVLSAKQSAVIEVILQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2503029 2509448 + Carg02930-RA Car09g00448 154185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00448 768 MobiDBLite consensus disorder prediction 199 278 - -
Car09g00448 768 ProSiteProfiles Zinc finger RanBP2 type profile. 26 60 IPR001876 -
Car09g00448 768 ProSitePatterns Zinc finger RanBP2-type signature. 35 54 IPR001876 -
Car09g00448 768 MobiDBLite consensus disorder prediction 199 291 - -
Car09g00448 768 Pfam Elongation factor Tu GTP binding domain 340 557 IPR000795 GO:0003924|GO:0005525
Car09g00448 768 Pfam Elongation factor Tu domain 2 586 650 IPR004161 GO:0005525
Car09g00448 768 Pfam Elongation factor Tu C-terminal domain 662 763 IPR004160 -
Car09g00448 768 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 337 562 IPR000795 GO:0003924|GO:0005525
Car09g00448 768 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00448 Car-Chr9:2503029 Car13g00838 Car-Chr13:9032041 4.05E-87 dispersed
Car09g00448 Car-Chr9:2503029 Car18g00051 Car-Chr18:231843 2.78E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00448 K14416 - csv:101219939 1238.4