Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00450 ATGGCTTCAATGGCGGCGTGGTTGATCGGAATAATAATCGTACTCTGCCAAGTCTCCACGCCATCGGCGCAGGGCGGCGGCGGCGGCGGAAATCCAATGTCCATCGTAATCGCTTTCTCGGTGGTTGGCTCTGTGGTTGGATTGCTCATTCTCGTGGCGATTGGCATATTCTCTTACAAATTTGCCAAGAAAGTTGTAAGAGAATGGAGAAACACATCGATTCCACCGCCGGATCTGGAATCGGCGCCGGTAGAGATTTTGGAAAAAGATGCACCGGAAATGGATAAATTCCTCCGAGAAATCGCCGACGAATATCCGATTAGATTCACCGCTCAGCAGCTCAACGTCTTCACGAACAACTACGCAACGCGGCTAGGATCCGGCGGCTTCGGTGATGTTTACAAAGGTCAGTTCCCAAACGGATTGAAGATCGCAGTGAAGATTCTCAAGAGAAACTCCGACAAAAAAGCTGAAAATCAATTCATGGCGGAAATCGGAACAATCGGCAGAACGCGGCATCGAAATCTTCTCAGGATGTACGGATTCTGTTACGACGAATTCATGAGCGCGCTGGTTTTGGAGTACATGGAGAACGGATCGCTCGACAGATTCTTGTACGGAAAAACCAGGAACGAAATCGTTTGGGAGAAATTGCAGGAAATCGCGATCGGAACCGCTAGAGGAATCGCGTATTTACATGAAGAATGCCATAGAAGAATCATCCATTACGATATCAAACCTGCGAACATTCTATTAGATGCGGATTTCTCACCGAAGATCGGCGATTTCGGACTTGCGAATCTCTGCAACAAAGACAACACACACGTATCTCTCACAGAATATCGAGGAACTCCGGGATTTTCGGCACCGGAGCTCTTGAGATTCAATTTTCCGGTGACTTTCAAGTGCGATGTATACAGTTTTGGAATGGTGCTGTTTGAGATGATCGGAAGGAGGAAGAACGCCGAAGTCAGTCCGTCCGGGAGCATCGATTGGTTTCCGATTCAGGTATGGGAGCAGTTCGACAAGGGCGAATTAGTGAATATGAGCGGTGAATGTAATGTTGAAGAGGATGGAGAGAGGAAAATGGCGATTGAGAGAATGTGTATGGTGGCTCTCTGGTGCGTACAGGACACGCCGGAGGATCGACCTCCAATGTCGGCGGTGGTAAAGATGTTGGAAGGGAGCGTTGAAATAACACCGCCGCCGAAGCCGTTTCAATATATGTATCCGATATCCACAGATACAAGCGCCTTCACCGCCGTCACCACCGTCACCGTCACCGTCGCCATGGATTCCGAGCAAATGAGCTCTGGTTCGACTCCGAGTCCGATTTGGTACAAGGGCTCTGTCCCTATTTTGAGAACTTGA 1371 49.09 MASMAAWLIGIIIVLCQVSTPSAQGGGGGGNPMSIVIAFSVVGSVVGLLILVAIGIFSYKFAKKVVREWRNTSIPPPDLESAPVEILEKDAPEMDKFLREIADEYPIRFTAQQLNVFTNNYATRLGSGGFGDVYKGQFPNGLKIAVKILKRNSDKKAENQFMAEIGTIGRTRHRNLLRMYGFCYDEFMSALVLEYMENGSLDRFLYGKTRNEIVWEKLQEIAIGTARGIAYLHEECHRRIIHYDIKPANILLDADFSPKIGDFGLANLCNKDNTHVSLTEYRGTPGFSAPELLRFNFPVTFKCDVYSFGMVLFEMIGRRKNAEVSPSGSIDWFPIQVWEQFDKGELVNMSGECNVEEDGERKMAIERMCMVALWCVQDTPEDRPPMSAVVKMLEGSVEITPPPKPFQYMYPISTDTSAFTAVTTVTVTVAMDSEQMSSGSTPSPIWYKGSVPILRT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2513713 2515290 + Carg02932-RA Car09g00450 154187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00450 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Car09g00450 456 ProSitePatterns Protein kinases ATP-binding region signature. 125 147 IPR017441 GO:0005524
Car09g00450 456 Pfam Protein kinase domain 123 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g00450 456 ProSiteProfiles Protein kinase domain profile. 119 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00450 - - - csv:101213257 701.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00450 Car-Chr9:2513713 Car15g00518 Car-Chr15:2806904 3.06E-77 dispersed
Car13g00847 Car-Chr13:9080769 Car09g00450 Car-Chr9:2513713 2.71E-64 dispersed
Car01g01186 Car-Chr1:11012983 Car09g00450 Car-Chr9:2513713 1.80E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g210 . . . . Bpe02g01248 . . . . . . . Car09g00450 . . . Cpe06g00388 . . . . . . . Cla05g01795 . . . . . . . . . . Lsi04g02188 Csa03g04396 Chy04g00306 . . . Bda01g01002 . . . . . . . Cmo09g00514 . . . . . . Bhi09g02350 . . . Hepe01g2080 Mch11g0619 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000610 0 8 0 0 0 4 2 4 5 4 3 4 3 4 3 3 4 2 3 1 4 2 3 5 5 3 5 7 7 4 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89083 PF00069 Pkinase 5.60E-46 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00450 Car_Chr09 FPKM 7.090479 8.357733 1.582444 1.296512 1.626623 0.984648 1.371327 4.712816 4.550488 4.340923