Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00456 ATGGTTAGCTTCTCCTGTATCTTATCGGCACTTACAACCACCATTGGAGAAGATGCTATGGATCGTGTCATTCTCCTCTCGTCATTTGGCATGGAATCCATCCGACTCAATGAACGTATTTTCTTGTTCACTTCCTTCTCGCACGGCCGACGCCCGGCGTCGGATAGACTCTCCCCGGAGTCCCAATCTCAAGCGGCTGACCTCTCGTGTCGTCAGACTCACCCGTCGGAAGCAGCTCCACCAGTCTCACGTAACGGATTTGTGTGGAATAATATTTTCGACATATTTGAGGAAATCGAAATTGCCAAGAGACGTTATGGAAAGCTGAATACAATTGTTATGAATGCGGTCCTGGAAGCTTGTGTTCACTGCGGTGATATTGATTTAGCTCTGAGGACTTTTAATGAAATGTCAAAGCCAGACAATTGTGGTTTAGACAACGTCAGTTATGGCACGCTATTAAAGGGTTTGGGTGAAGCTCGCAAGATTGATGAAGCATTTCAATTACTTGAATCTGTGGAAGAAGGTACTGCTATTGGAAGTCCAACATTGTCCGCACCACTTATTTATGGTGTTCTAAATGCTTTAACCGAAGCAGGAGACATGCGCCGTGCCAATGGTCTAATAGCACGATATGGATTCTTACTTCATGAAGGAGGCAATCTCTCTATATCAGTTTACAACTTATTGATGAAGGGGTACATAAGCTCTGGTGTTCCTCAAGCTGCTTTAGCTCTGTATAATGAGATGCTAAATCTGGAGTTGAAACCTGATAAGCTTACATATAATACATTAATCTCTGCTTGTGTGAAGATCAACAAACTGGACGCAGCTATGTATTTCTTTGAGGAAATGAAGGAACGAGCTGGTAAGTATAATCAGGAAGATATTTTTCCTGATGTTGTGACGTACACTACTTTACTTAAGGGTTTTGGGATTCTGAAAGATGTCCGTCTTGTTCACAAAATTGTGCTGGAAATGAAGACTTGTCATGATTTGTTGATTGATCGAACAGCATACACTGCAATGATTGATGCTTTGGTTAACTGTGGCTCTATAAACGGTGCTCTTTCTTTATTTGGGGAATTATTGAAGCTTTCTGGATGGTATTTGGACTTGCGGCCAAAACCACATCTCTATCTCACTTTTATGAGATTTTTCTCTAGTAGAGGAGATTATACGATGGTCAAATGTTTGCATAGACGCATGTGGTTGGACTCCTCTGGAAGTATTTCTCCTGGATTTCAAGAAGAGGCAGACCATCTTCTCATGGAGGCAGCTTTACATGACAATCAGATTGATGTGGCAACAGAGAAATTATCAACAATTATTAAGAGATGGAAGGGAATATCGTGGTCTAGCAGAGGAGGCAGTGTTGCTCTGCGTATTGAAGCATTGCTTGGACTCACCAAATCTTTCTTTAGTCCTTGCATATTTCCTCGGGTAAATCCAGGTGCTCCTATTGAGAGTGTCATGATGCCATTTAAAGCCGTTCAGCCATTAAATGGAAACTTACAGTTGAAGGAAGTGGTCATGCGTTTCTTTGACAAATCAGTTGTGCCTATCATAGACGATTGGGGTAGATGCATTGGACTATTGCACCGAGAAGACTGCTCTGAGTTGGAGGCTCCCCTTTGGAAAATGATGAGAAGCCCTCCTCCCGGTGTTACGACTACAACATCGATCGGACATGTTGTGAATCTAATTCTACGAAAGAGGTACAAAATGATTATTATTGTAAGACATAGCAAGTTTAGTACTTACGACAGCTCGAGTTCGAGGGCTGTTGGTGTTTTTACTATCGAGCAATTGTATGGCTTCATTTCTCCCATTCCCATGCAGCTTCAGCCAAACATTCCACATAAGACGTAG 1872 42.31 MVSFSCILSALTTTIGEDAMDRVILLSSFGMESIRLNERIFLFTSFSHGRRPASDRLSPESQSQAADLSCRQTHPSEAAPPVSRNGFVWNNIFDIFEEIEIAKRRYGKLNTIVMNAVLEACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKIDEAFQLLESVEEGTAIGSPTLSAPLIYGVLNALTEAGDMRRANGLIARYGFLLHEGGNLSISVYNLLMKGYISSGVPQAALALYNEMLNLELKPDKLTYNTLISACVKINKLDAAMYFFEEMKERAGKYNQEDIFPDVVTYTTLLKGFGILKDVRLVHKIVLEMKTCHDLLIDRTAYTAMIDALVNCGSINGALSLFGELLKLSGWYLDLRPKPHLYLTFMRFFSSRGDYTMVKCLHRRMWLDSSGSISPGFQEEADHLLMEAALHDNQIDVATEKLSTIIKRWKGISWSSRGGSVALRIEALLGLTKSFFSPCIFPRVNPGAPIESVMMPFKAVQPLNGNLQLKEVVMRFFDKSVVPIIDDWGRCIGLLHREDCSELEAPLWKMMRSPPPGVTTTTSIGHVVNLILRKRYKMIIIVRHSKFSTYDSSSSRAVGVFTIEQLYGFISPIPMQLQPNIPHKT 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2534323 2542001 - Carg02938-RA Car09g00456 154193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00456 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 288 IPR002885 -
Car09g00456 623 Pfam PPR repeat 339 365 IPR002885 -
Car09g00456 623 Pfam Pentatricopeptide repeat domain 292 329 IPR002885 -
Car09g00456 623 MobiDBLite consensus disorder prediction 49 79 - -
Car09g00456 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 176 IPR002885 -
Car09g00456 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Car09g00456 623 MobiDBLite consensus disorder prediction 56 79 - -
Car09g00456 623 Pfam PPR repeat family 110 157 IPR002885 -
Car09g00456 623 Pfam PPR repeat family 224 271 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00456 - - - csv:101218517 961.059
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00456 Car-Chr9:2534323 Car07g00015 Car-Chr7:98229 3.82E-06 dispersed
Car01g01192 Car-Chr1:11048544 Car09g00456 Car-Chr9:2534323 1.05E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g198 . . . . . . . . . . . . Car09g00456 . . . Cpe06g00392 . . . . . . . Cla05g01804 Cam05g1926 Cec05g1938 Cco05g2001 Clacu05g1918 Cmu05g1800 Cre05g1926 Cone4ag1857 Cone7ag1764 . . Lsi04g02196 Csa03g04406 . . . . . . . . . . Sed13g2091 . Cmo09g00518 . . . . . . Bhi09g02372 Tan01g3737 Cmetu04g2143 . Hepe01g2090 Mch11g0628 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013021 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00456 Car_Chr09 FPKM 0.0 0.0 0.0 0.0 1.042287 0.816748 0.980106 0.0 0.0 0.0