Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00458 ATGGCGGTCGATCTAGTGAGTTTTCCTAAGATTGATGATCAGATGGTTATACAGGAAGCTGCATCGCAAGGATTGAAGAGTATGGAGCATCTGATTCGTCTTCTTTCTCAGAAGAAAACTTCAAACCATGGCGATTGCTCTGACCTAACCGATGCAACTGTTCTGAAGCTTAAGAAAGCGATCTCTCTCCTTAATCGGACTGGTCACGCTAGGTTCCGGCGAGGTCCGGTTTCTTTCTCCTTCTCATCGCCGATATCTGGTTCATTTCCTCATCTCTCTGTTCCTCAAGATCAGACGATGAGTCTCGCTCCTTCTCTGTTTACTTCGCCGGCAACGATTTCTGCTCCGCCGCAGGCGAATATCGTCTCTGCAGCGGCGAACTTGCCTCAGTCGCAGCCTCAGAGTTTGACTCTTGATTTCACCAGGCCGAATATTTTGAACCCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGAAACCTTCAGCGTCTCTTCCAGTTCCCCTTTGAAGTCCTCTGCCATTACTGGAGACGGAAGCGGATCCAACGGAAAAGTAGGAACGGCCTTGTTTCTGGCACCGGCACCGACTGCTTCCGGTGGAAAACTGCCGCTCTCTGCGGAGGCGTGCAAGAAGAAGTGTCACGAACAAGATCATTCCGAAGATTTGTCCGGGATAATCTCTGGATCGAAATCTGGTTCCGGCAAGTGCCATTGCTCAAAGAAAAGAAAAAATCGTATGAAGAAGACGATTCAAATCCCGGCTATTAGTTCGAAAATCGCCGACATTCCAACGGACGAGTTCTCGTGGAGGAAATACGGTCAGAAGCCGATCAAGGGATCTCCATACCCGCGAGCATATTATAAGTGTAGCACGATGAGGGGATGTCCGGCAAGGAAGCACGTGGAGAGAAATCCGAAGGATCCGGCGATGTTGATTATTACGTATGAAGGGGAGCACCGCCATACGCCGAGCTCGTTGCTGGAAAATAGGGCCGCCGGAGTGTCTTTAGCTTTGGACTCAACTTGA 1029 49.47 MAVDLVSFPKIDDQMVIQEAASQGLKSMEHLIRLLSQKKTSNHGDCSDLTDATVLKLKKAISLLNRTGHARFRRGPVSFSFSSPISGSFPHLSVPQDQTMSLAPSLFTSPATISAPPQANIVSAAANLPQSQPQSLTLDFTRPNILNPNPKGTDLEFSKETFSVSSSSPLKSSAITGDGSGSNGKVGTALFLAPAPTASGGKLPLSAEACKKKCHEQDHSEDLSGIISGSKSGSGKCHCSKKRKNRMKKTIQIPAISSKIADIPTDEFSWRKYGQKPIKGSPYPRAYYKCSTMRGCPARKHVERNPKDPAMLIITYEGEHRHTPSSLLENRAAGVSLALDST 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2547682 2549392 - Carg02940-RA Car09g00458 154195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00458 342 Pfam WRKY DNA -binding domain 266 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car09g00458 342 Pfam Plant zinc cluster domain 211 262 IPR018872 -
Car09g00458 342 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00458 Car-Chr9:2547682 Car20g00828 Car-Chr20:5497044 5.74E-60 dispersed
Car01g01194 Car-Chr1:11055619 Car09g00458 Car-Chr9:2547682 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4064 PF03106 WRKY 1.00E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00458 - - bhj:120087087 505.368