Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car09g00472 | ATGGATCCAAATTCGAAGAAGTCGAACAAAATCAGAGACATCGTAAGGCTTCACCAGATCCTGAAGAAATGGCGGAAGTTAGCGGACTCATCGAAAACGGCGAACAAAGCCTCCGGCACGGCGGCGGGATCGGGAGGCAAGAGCATAAAGTTTCTGAAACGAACGCTTTCCTCCGGCGGGGAAATCTCCGGCGGCGCCGTGCCGAAAGGCTATTTGGCGGTGAGCGTCGGAGAGGAGCAAAAGCGATTTGTTATACCGACGCAGTATTTAGGGCATCCGGCGTTCGAGATTCTGTTGAGAGAGGCGGAGGAGGAGTTCGGGTTTCAACAAACGGGGGTTTTGAGGCTGCCGTGTGAAGTAACGGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAGAAGAAGAACGGGGATTTGTTAGGCGGAGAGGAGGTGGTGAGTTTCTGTTCCTTGGAAACGCTGCACATTACGACGTCGCATCGTCCGCAGAGTCCAATGTGCAGATAA | 504 | 52.58 | MDPNSKKSNKIRDIVRLHQILKKWRKLADSSKTANKASGTAAGSGGKSIKFLKRTLSSGGEISGGAVPKGYLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFENVVKLVEEKKNGDLLGGEEVVSFCSLETLHITTSHRPQSPMCR | 167 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 2637682 | 2638185 | - | Carg02954-RA | Car09g00472 | 154209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car09g00472 | 167 | Pfam | Auxin responsive protein | 25 | 129 | IPR003676 | GO:0009733 | |
| Car09g00472 | 167 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 7 | 167 | IPR003676 | GO:0009733 | |
| Car09g00472 | 167 | PANTHER | SAUR FAMILY PROTEIN | 7 | 167 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00223 | Car-Chr2:1451573 | Car09g00472 | Car-Chr9:2637682 | 1.35E-25 | dispersed | |
| Car04g01897 | Car-Chr4:11110863 | Car09g00472 | Car-Chr9:2637682 | 2.05E-24 | dispersed | |
| Car07g00835 | Car-Chr7:4429470 | Car09g00472 | Car-Chr9:2637682 | 7.79E-19 | dispersed | |
| Car09g00472 | Car-Chr9:2637682 | Car19g00545 | Car-Chr19:7003587 | 4.62E-25 | dispersed | |
| Car11g01396 | Car-Chr11:11405089 | Car09g00472 | Car-Chr9:2637682 | 3.23E-10 | dispersed | |
| Car18g00242 | Car-Chr18:1389509 | Car09g00472 | Car-Chr9:2637682 | 3.24E-16 | dispersed | |
| Car19g00546 | Car-Chr19:7010332 | Car09g00472 | Car-Chr9:2637682 | 1.23E-16 | dispersed | |
| Car20g00237 | Car-Chr20:1392731 | Car09g00472 | Car-Chr9:2637682 | 1.40E-19 | dispersed | |
| Car01g01208 | Car-Chr1:11133570 | Car09g00472 | Car-Chr9:2637682 | 8.40E-100 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car09g00472 | K14488 | - | csv:101216710 | 260.381 |