Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00489 ATGGATAAGCTGTGCTGTTTTAATGCTTCATACTCTCGGGTTCGGTCGGCGTCGAACTACGGTAAAGGAAGAAGCCATGAAGGAGTAATCAAGTATGGATTCTGCCTTGTGAAAGGGAAAGCTAACCATCCCATGGAAGATTACCATGTTGCTAAGTTCGTTCAAATTCAAGAACATGAATTGGGGCTCTTTGCTATCTACGATGGTCATGTTCAACAAACTGTGCCTGCTTACTTACAAAAGCATCTCTTTTCTAATATCCTCAAAGAGGAGGACTTTTGGGTCGACCCGAACAGCTCCATCTCGAAAGCTTACGAGAAAACGGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGCGGATCAACCGCTGTCACTGCTATTCTGATTAACGGTCAACGACTATGGGTGGCCAACGTTGGAGATTCACGCGCAGTTCTTTCGAGAGGCGGTGAAGCTATACAAATGACCATCGATCACGAGCCGAATGCCGAACGCAGCATCATCGAGAATAAAGGTGGCTTCGTTTCTAACATGCCAGGAGACGTACCTCGAGTGAACGGTCAGCTAGCAGTTTCGCGAGCGTTTGGAGACAAGAGTCTCAAATCTCACCTACGATCGGATCCCGACATACGTGATATTAACATAGACGCCAACACGGACGTATTAATTCTCGCTAGCGACGGTCTTTGGAAGGTCATGTCGAATCAAGAAGCGGTCGATATCGCACGAAGAATCAAGGACCCGATGAAGGCTGCAAAGCAGCTAATAACAGAGGCTTTGTTGAACGAGAGTAAAGACGACATATCGTGCATTGTCCTTCAAGTGGTGAGATCTTTTGATCGTATTCTTGGTGGCTTTGTTCTGGAGGCGTACATTGATTCTCTGAGTTTTGGGGGTTTTCTTTTGTCCAGATTTTGTGCTATCACATCTCTGGCTCCCCTTGCTTGGATCGATTTGGAACTAGAGAAGCCGACCGAATTGAATTATCTGTCCAAAACTTTGCATGTCAGCAGCATCCATCACTGTGAGGAGCCTTTCCAAGGTGGAGAAAGGAAGCCGTCTACCCTGGACGTTTCAGTTCTGTACCCATCAGAGAATAATTCTAAGCTGGATGTTAAGTTAACGAACAATCATGAGAGTTCTGTAGCAGGAGGAGCAGTAGAACCAGCATATGAAGGGGAGGATGAGCGAGATAACTCGATCAAGCGGAACCCTTCTGACTTTGATCTCCCTGCTCAAGACACGTGTGGAGAAGAATTTGAGTTTCAATTTCCAAGTTCATTGGGAAAACAATTTGATAAGATCATTATTGAAGGGGTTGATACAATTCAAAGTGGACATGTTAGTGATCCTGGAATTGGTAAGGCAGTATCTTGGGCATTACCTAGACTTAGACGCTCATGTTCTAATCTGGAAAGCAGGGATGTGCTTAGAAACTTATCTCCTCATCAGTTGCCTCCTCCAATGTCTCAGTCTTTCGAAAAACTGCAAGAATTGGCAGACGAAATGAGGAACTATGTTGATCCGGGCAGTCCAGGGTCTGTAATGACTCCTCACAGTGCTGATAAAGTGATGTTGAAGAAGCGTTCTTCAAGCCAGATTCTACCTTCCAGAAGCAGGAGATTGTGGTGGAAGTTGTTCCTGTGGAGCCATAGAAACCTACAAAAGCCGTGGACTACCAATACCAAGGCTCTTCCCACCAGCTCTGCTTTCAACCAGCAAGGTGGGTATTGCTCTGACAATCTCGAGCCGAACAGAGCAGCGGGGAAGAGTATAATGGAATCACCTGGATCAGGAGAATGCCCCGAAAACAACAACAGCGATGATCAGGATCGGGAGAATGTGTGTATTGGAGTTTCTGGCTTATGGCCACAAAACCAGTGGGTTGCATTTTCAGCAGAATCATCTTCTTCCCTAAGAAGAGTGGATGAGTGGGTGAAGAAACTTCAACTAGAACCCTGTCTTTCAATTGACGTGGTCGGGGTTGACAATGATTCAGATACTTTCTTCCCGCGAACTCCAGAGCGAACTGCAACTCACACACCCCGACGTGGAGAACCCAATCTGACAGAAGAGATTTTGTATGCCAATAGCATCATTGGGTCGCTCAATTCTTCCTCAACCGTGGCTCACATCTCTGGCATTGGCTTAAAAGCCATACCCACAATCTCGCACCTATCCGGTCTTAGATCTGTCAACTTGTCTGGAAATCTCATAGATTACATTAACCCTGGATCACTGCCCAAGGGATTGCATACTCTTAACTTGTCCAGGAACAAGATCAGTGCCATTGAAGGACTCAAAGAATTAGCACGACTTCGGATACTTGATCTGAGTTACAATCGTATATCTCACATTGGACATGGGTTGTCAAACTGTGCGATTATTAAGGAACTCTATCTTGCTGGCAACAAGATTAGTGATGTTGATGGACTGCATCGACTCTTGAAGCTCACGGTTCTCGACCTAAGCTTCAACAAGATTTCAACAAACAAAGCTCTGGCCCAACTTGTTGCCAACTACAACTCTCTTCAAGCTCTTAATCTGTTGGGGAATCCAATTCAAAGTAATGTGAGCGACGACCAGCTACGCAAGGCAGTAGTTGGCCTTCTTCCAAGTCTTGTTTATCTAAACAAGCAGGCCATCAAAGCACAGAGAGCTCGAGAAGTCGCAACTGACCGCGTTGCCAAAGCTGCACTAGGGAACGGTAGTTGGTGTTCTCATAGAAGAACATCAAGGAAAACGAGCCATGTAGCACCATCATCATCTTCCATCAGTGGGCACAGGAGTAGTGCAAGTGATGCACACAAAGGCAGGCACAGATCAAAAGCGCCAACCTTACGCCATTCTTCTCTGGGGATGGATTCATCAGCCCTTGCATCATCATCATCTCGTTAG 2907 46.13 MDKLCCFNASYSRVRSASNYGKGRSHEGVIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHVQQTVPAYLQKHLFSNILKEEDFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSRGGEAIQMTIDHEPNAERSIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDINIDANTDVLILASDGLWKVMSNQEAVDIARRIKDPMKAAKQLITEALLNESKDDISCIVLQVVRSFDRILGGFVLEAYIDSLSFGGFLLSRFCAITSLAPLAWIDLELEKPTELNYLSKTLHVSSIHHCEEPFQGGERKPSTLDVSVLYPSENNSKLDVKLTNNHESSVAGGAVEPAYEGEDERDNSIKRNPSDFDLPAQDTCGEEFEFQFPSSLGKQFDKIIIEGVDTIQSGHVSDPGIGKAVSWALPRLRRSCSNLESRDVLRNLSPHQLPPPMSQSFEKLQELADEMRNYVDPGSPGSVMTPHSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPWTTNTKALPTSSAFNQQGGYCSDNLEPNRAAGKSIMESPGSGECPENNNSDDQDRENVCIGVSGLWPQNQWVAFSAESSSSLRRVDEWVKKLQLEPCLSIDVVGVDNDSDTFFPRTPERTATHTPRRGEPNLTEEILYANSIIGSLNSSSTVAHISGIGLKAIPTISHLSGLRSVNLSGNLIDYINPGSLPKGLHTLNLSRNKISAIEGLKELARLRILDLSYNRISHIGHGLSNCAIIKELYLAGNKISDVDGLHRLLKLTVLDLSFNKISTNKALAQLVANYNSLQALNLLGNPIQSNVSDDQLRKAVVGLLPSLVYLNKQAIKAQRAREVATDRVAKAALGNGSWCSHRRTSRKTSHVAPSSSSISGHRSSASDAHKGRHRSKAPTLRHSSLGMDSSALASSSSR 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2729001 2736044 + Carg02971-RA Car09g00489 154226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00489 968 MobiDBLite consensus disorder prediction 908 968 - -
Car09g00489 968 MobiDBLite consensus disorder prediction 919 934 - -
Car09g00489 968 MobiDBLite consensus disorder prediction 386 412 - -
Car09g00489 968 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Car09g00489 968 Pfam Leucine Rich repeat 820 832 IPR001611 GO:0005515
Car09g00489 968 MobiDBLite consensus disorder prediction 594 614 - -
Car09g00489 968 ProSiteProfiles Leucine-rich repeat profile. 775 797 IPR001611 GO:0005515
Car09g00489 968 Pfam Leucine rich repeat 753 809 IPR001611 GO:0005515
Car09g00489 968 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Car09g00489 968 ProSiteProfiles Leucine-rich repeat profile. 753 774 IPR001611 GO:0005515
Car09g00489 968 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Car09g00489 968 MobiDBLite consensus disorder prediction 393 407 - -
Car09g00489 968 ProSiteProfiles Leucine-rich repeat profile. 798 819 IPR001611 GO:0005515
Car09g00489 968 MobiDBLite consensus disorder prediction 952 968 - -
Car09g00489 968 ProSiteProfiles Leucine-rich repeat profile. 820 841 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01227 Car09g00489 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00370 Car-Chr4:2105137 Car09g00489 Car-Chr9:2729001 5.13E-146 dispersed
Car07g00061 Car-Chr7:384788 Car09g00489 Car-Chr9:2729001 2.66E-08 dispersed
Car09g00489 Car-Chr9:2729001 Car16g00219 Car-Chr16:1235974 4.22E-145 dispersed
Car18g01219 Car-Chr18:11737181 Car09g00489 Car-Chr9:2729001 2.47E-55 dispersed
Car01g01227 Car-Chr1:11267398 Car09g00489 Car-Chr9:2729001 2.23E-111 transposed
Car11g00296 Car-Chr11:1614295 Car09g00489 Car-Chr9:2729001 1.27E-08 transposed
Car19g00745 Car-Chr19:8329490 Car09g00489 Car-Chr9:2729001 5.04E-72 transposed
Car01g01225 Car-Chr1:11254086 Car09g00489 Car-Chr9:2729001 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00489 - - cmos:111443155 1217.99