Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00506 ATGCCTATTGGCCTTTTGCTGCCCACCTTCTTGGGACTGGCTTCATGTAGATGTGCACAAAATTGGTCATGCAAACTGTTTTGGGAATCTATGTTCTATGCTTTGAAGATTTCTAGTATTTACAGGCTTCATGATGGTAATGGAGAAGACGTTTACTTGGCATTCAATGCTCATGATTATTTTGTCAGTGTTTCATTACCCTCTCCTCCAACAAATCGAAAATGGTTCCGTGTGGTGGACACCAATCTGGAGTCTCCCCAAGACTTTGTATTGGATGGCATTCGGGGCATTGGAAGCACCTATAATTTGGCTCCCTATTCCTCAATTCTTCTGAAAGCCAAGTTAGAAAATGAACTTCTTTGA 363 41.6 MPIGLLLPTFLGLASCRCAQNWSCKLFWESMFYALKISSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2837826 2839632 + Carg02988-RA Car09g00506 154243

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00506 K01214 ISA, treX; isoamylase [EC:3.2.1.68] - csv:101209348 146.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00506 Car-Chr9:2837826 Car17g01091 Car-Chr17:8461672 5.33E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g452 . . . . . . . . . . . Cma09g00576 . . . Cpe06g00439 . . . . . . . . . . . . . . . . Cone7ag1263 . . Lsi04g02256 Csa03g04467 Chy04g00234 . Blo17g00110 . . Bda13g01386 . Bpe14g00465 . Bma02g00128 Sed05g1579 . Cmo09g00562 . . . Car09g00506 . . Bhi09g02468 Tan01g3816 Cmetu04g2147 . Hepe01g2148 Mch11g0686 . Cla11g01401 Cam11g1458 Cec11g1485 Cco11g1482 Clacu11g1619 Cmu11g1436 Cre11g1855 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0037023 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00506 Car_Chr09 FPKM 15.072238 15.773396 7.684 6.343965 6.239191 7.023324 5.140053 5.504777 5.808984 5.290178