Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00516 ATGGTTCAAAGGTTTAATTTAACAAGTATTTTTCAGCTTGATAAATGCAGAAAATTATTACAAATTGCTGAAAAATGCTTGGAGGGTGGCAACTACTTTGGTGGAATTGAGGCATGTAATGAAATTTTGGATGGATTTGGTCGTATTATTGGAGTTAGTCTCAAGCACGATTCATTATGCACACGTGCTGCTTTATTACTCAAGCGGAAGTGGAAAAATGATGTTCATATGGCCATAAGAGATTGTTACAGTGCTAGGAAAATAGATAATTCCTCTTTCAGAGCACATTACTACATGTGTGAAGCTCTATCACAGCTAGGTAGACATAAGGAAGCCCTAGATTTTGCCTTTGCTGCTCAGTGTTTAGCCCCATCTAATCCCGAAGTGGCAGAGAAAGTGGAAAGTGTAAAGAGGGACCTCGCTGCAGCTGAATTGGAAAAATCAAATAAAGACAATGATGGAGCTATAAGATCAGCACCGTTAGGTGGTGTATTATCATTAAGTGACCTTCTTCACCGCTCAGATGCAAACAGTGATGTTTCACAAGATGGGGTGAGATCAGAAAGAGAAGATTCTGACTATGATGACGAGGTGGAGCTGGACTTTGAAACCTTATCAGGTGATGAAGCCCAAGACGTCGATTCTAACGTTCTACATGGAAGTGTAAATCTTAGAATACATAGACGAGTTGATCCAGCAATAGAAAGGGTTGGCGCGAATGGCTCCTGTGGGTCTCCTTCATCGTCACACAATGATGGAATACTCTATCAGCCTGAACCTGTCATTGATATGAAGCAAAGATATGTCGGTCATTGCAATATCGGAACTGATATTAAACAAGCTAGTTTTCTCGGGCAAAGAGGTGAATATGTTGCCAGTGGAAGTGATGATGGGAGATGGTTTATTTGGGAGAAGAAAACTGGTAGACTGATTAAAATTCTTGTTGGAGATGGAGCTGTTGTGAATTGCGTCCAGAGTCATCCATTTGATTGTGCCATTGCTACTAGCGGGATTGATAATACCATTAAGCTATGGACTCCAACTGCTCCAGTCCGATCAGTCGTAGATGGTGGAGCGATTGGACCGCAGGCTGCTGATGTGTTGGCTGCAATAGAGAACAATCAGCGTAGACTCTGCCGTAATAGAGAAGCCATACTGTAA 1161 41.77 MVQRFNLTSIFQLDKCRKLLQIAEKCLEGGNYFGGIEACNEILDGFGRIIGVSLKHDSLCTRAALLLKRKWKNDVHMAIRDCYSARKIDNSSFRAHYYMCEALSQLGRHKEALDFAFAAQCLAPSNPEVAEKVESVKRDLAAAELEKSNKDNDGAIRSAPLGGVLSLSDLLHRSDANSDVSQDGVRSEREDSDYDDEVELDFETLSGDEAQDVDSNVLHGSVNLRIHRRVDPAIERVGANGSCGSPSSSHNDGILYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKKTGRLIKILVGDGAVVNCVQSHPFDCAIATSGIDNTIKLWTPTAPVRSVVDGGAIGPQAADVLAAIENNQRRLCRNREAIL 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2895819 2899874 - Carg02998-RA Car09g00516 154253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00516 386 MobiDBLite consensus disorder prediction 176 196 - -
Car09g00516 386 Pfam WD domain, G-beta repeat 268 303 IPR001680 GO:0005515
Car09g00516 386 Pfam WD domain, G-beta repeat 309 345 IPR001680 GO:0005515
Car09g00516 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 345 IPR001680 GO:0005515
Car09g00516 386 Coils Coil 133 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00516 K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1 - csv:101206836 690.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00516 Car-Chr9:2895819 Car19g00591 Car-Chr19:7300406 1.39E-20 dispersed
Car01g01246 Car-Chr1:11379360 Car09g00516 Car-Chr9:2895819 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g482 . . . . Bpe02g00134 . . Bma01g02591 . . . Cma09g00587 . . . Cpe06g00448 . . . . . . . . . . . . . . . Cone4ag1309 . . . . Csa03g04480 Chy04g00221 . . . Bda11g00790 . . . . . . Cmo01g01684 Cmo09g00572 . . . Car09g00516 . . Bhi09g02483 . . . Hepe01g2160 Mch11g0699 . . . . . . . . . . . Cme04g00248
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005324 1 4 1 1 1 0 3 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 2 1 39