Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00524 ATGGATTGCTTGACCTCCTACTTTTTACCCGCCACCTTAGCCTTCTCTAAGTCCTCCGTTTCAGCTTCTAAGCTGCCATTTTTCGCCGTCGCTCGTGGAGCCTTGCCGGTGTTCGGTGTTCTCAGAGCCTCTCGTACCGCCGATGCGCCGCTGTCCGTCGACGATTCGCCGGAAAACCGCGCTGATAAGGAGGTTAAACTTTGGGGCGGTCGTTTCGAGGAGAGCGTCACCGATGCGGTTGAGCGATTTACCGAATCGATCTCCTACGATAAGCAACTTTACAAGCACGATATTAGAGGGAGTCGAGCTCATGCTTCAATGCTAGCTAATCAGGGATTGATGAGTGTTGCTGAAAGGGACAGTATCATTGAAGGTTTGGATGAAATTGAGAGGCGAATTGAAAGTGGTGATTTTGTTTGGAGAACAGATAGGGAGGATGTTCATATGAACATTGAGGCTGCCTTGATTGATATGATTGGGGAACCTGCGAAGAAGCTCCATACTGCTCGAAGCCGCAACGATCAAGTTCTAACTGATTTTCGATTGTGGTGCCGGGATGCAATTGATGCTATATTAGATGCTATTAGGTACCTTCAAGTTTCCATGGTAACTCTGGCATTGAAGAACGAGGGATTAATCGTTCCGGGCTATACTCATTTACAAAGAGCGCAACCGGTTCTACTTCAGCATCTTCTCTTAGCCTTTGTTGAGCAGCATAGCACTATGTGCTACTTGATGGGATTATGTAACTGTCCAAGCCCGCCGTTGGCCGATATTGTCCTCTTTGGGCTTTCCCTCAAGCTTGAAAGAGATGCTGGTCGTTTGTCGGATTGCAGAGTTAGGCTAAATCTTTGCCCGCTAGGTGCATGTGCGCTGGCTGGCACTGGCCTTCCTATTGATCGTTTTATGACTGCTGAGGCTTTAGGGTTCACCGCTCCCTTGAGAAATAGTATCGATGCAGTTTCAGATCGAGATTTTGCCCTGGAATTTCTTTCTGCCAATGCCATCACCGCCATCCATCTTTCAAGGCTAGGAGAAGAATGGGTGTTGTGGGCTTCCGAAGAGTTCGGATTCATAACACCCAATGATTCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCCGATCCGATGGAACTTGTTCGTGGGAAGTCGGCTAGAGTCATCGGAGACTTGGTCACCACTCTCACTTTATGCAAAGGTCTGCCTCTGGCCTACAATCGTGATTTGCAGGAAGACAAGGAACCTGTATTCGACAGCGTAAAAACAATATTGGGGATGCTCGAAGTGTCAGCTGAGTTTGCTCAGAATATTTCGTTCAATCGGGAGAGAATCGAAAAGGCTTTACCTGCTGGTTATCTCGACGCCACAACACTTGCCGATTACCTCGTGAAGAAGGGAATACCTTTCAGAACAGGCCATGATATAGTTGGAAAGTCTGTTGCCTTGTGTGTCACAAAAAGTTGCTGCCTACAGGACTTGAGTCTGGATGAGCTAAGAAGCATAAGTCCAGAGCTGCCTGTGTTGCTACTCAAATCGAATACTGGGTTAATAAACTCCAAATCAATCTGTAGATCTGGTTTGCAAGCCATCTGGAAATGGCTGTTTTCAAGTCCAAGATCCTGCAGTGCAAGCATTCTGGGGCCACAGACCCGCCAATTTCGGGAAGAATCAGAGGAAAATTTGATGGAAAATTCCAACAAGGTTGAAGCAGAACGCTTGCTTGGAATCGCTGAGAAACTCTTGCACAGCCGTGATTTCACAGGCTCCAAAGATTTCGCCATCTTAGCTCAAGAAACAGAGCCTCTTTTGGATGGCTCCGATCAGATCTTAGCGGTTGCGGATGTGTTATTGGCGTCGGAGAAGCGAATCAACAACCACAATGATTGGTATTCGATTCTTCAGGTTCAACGGCAATCTGATGATTCGGATCTCATCAAGAGGCAGTATCGGAGACTCGCGTTACTTCTACATCCCGACAAGAACAAATTTCCTTACGCTGATCAAGCTTTCAAGCTGGTTGCAGATTCGTGGGCTGTATTGTCCGACCACTCGAAGAAATCACTCTATGATAATGAGCTCAGTCTCTCTGCTAAGATCGATTTGTCCCAGCAGAACAAATTTCCGGTGCGCCGAAGCCAACGATCCGGTTGGAAGAAAGAGCACGAGTTTGAGAGTAACGATGGCGCCAAGGCCGATCAATCTCCAAATCAGCGGGTGAAATTATCGAGTTTCTGGACCGCTTGCCCTTACTGTTACGTGTTATTGGAGTATCCTAGGGTTTATGAGGGTTGCTGTTTGCGGTGTCAGAATTGCAAGAGGGCATTTCAGGCGGTGTTGCTTCCGTCTCTTCCGCCGCTCGTTCAGGGCCAGGAAGCCTACTATTGCTGCTGGGCTTTCTTTCCGATGGGGTTTGCCGCTCAAATTCCCGAGAAAGGTGGGAAGGGCGGCGAAACAGCGGCACCGGCGACAGCGTTCCCCAATTGGATGCCCCCAATATTCTCTAACAAGCCGCAAGAAACTAGTGGGAATGGAGAAACTGCGGCGGCGGAGGAGACGGTGACAGGTAGTGAAAGAGCGGCGGCGGTTGCTCGGACTCCGATTGTGAGTGACACTGGCACAGGGAAGAAGAGGGGCAGGGGAAACCGCCGATTGCAGCCTAATCTTTATATTGAGCGGTTATATTCAGACGAGTTAGAACAAAGACGGCGGAAGCTGGGGAAACCTGAGATGCTTTTTAATAACACCTTGAGGGGAAGCCTAGAAGGAAAAACCCAAAGAGGACAATATCTGCTAGCGGTGAGCTTGGGCTATTACAAATGGTATCAGAGCCAGATACTGACCGGTGTGTCAGCGAGGACGTTGGGCTCCGAAGGGGGTGGATTCTGCTTAAGCGTTGCTCTTCTTCTATCCGTCGTCGGCATCGACCTAGTACAATTGGCTATGGCGAAGTTCTTCCCTTCAACCAATGCTGGATTTCTGTTCGACTTCAGTTGGTAA 3009 48.55 MDCLTSYFLPATLAFSKSSVSASKLPFFAVARGALPVFGVLRASRTADAPLSVDDSPENRADKEVKLWGGRFEESVTDAVERFTESISYDKQLYKHDIRGSRAHASMLANQGLMSVAERDSIIEGLDEIERRIESGDFVWRTDREDVHMNIEAALIDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDAILDAIRYLQVSMVTLALKNEGLIVPGYTHLQRAQPVLLQHLLLAFVEQHSTMCYLMGLCNCPSPPLADIVLFGLSLKLERDAGRLSDCRVRLNLCPLGACALAGTGLPIDRFMTAEALGFTAPLRNSIDAVSDRDFALEFLSANAITAIHLSRLGEEWVLWASEEFGFITPNDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTTLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFAQNISFNRERIEKALPAGYLDATTLADYLVKKGIPFRTGHDIVGKSVALCVTKSCCLQDLSLDELRSISPELPVLLLKSNTGLINSKSICRSGLQAIWKWLFSSPRSCSASILGPQTRQFREESEENLMENSNKVEAERLLGIAEKLLHSRDFTGSKDFAILAQETEPLLDGSDQILAVADVLLASEKRINNHNDWYSILQVQRQSDDSDLIKRQYRRLALLLHPDKNKFPYADQAFKLVADSWAVLSDHSKKSLYDNELSLSAKIDLSQQNKFPVRRSQRSGWKKEHEFESNDGAKADQSPNQRVKLSSFWTACPYCYVLLEYPRVYEGCCLRCQNCKRAFQAVLLPSLPPLVQGQEAYYCCWAFFPMGFAAQIPEKGGKGGETAAPATAFPNWMPPIFSNKPQETSGNGETAAAEETVTGSERAAAVARTPIVSDTGTGKKRGRGNRRLQPNLYIERLYSDELEQRRRKLGKPEMLFNNTLRGSLEGKTQRGQYLLAVSLGYYKWYQSQILTGVSARTLGSEGGGFCLSVALLLSVVGIDLVQLAMAKFFPSTNAGFLFDFSW 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2941902 2949666 - Carg03006-RA Car09g00524 154261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00524 1002 ProSitePatterns Nt-dnaJ domain signature. 674 693 IPR018253 -
Car09g00524 1002 Pfam Argininosuccinate lyase C-terminal 456 508 IPR029419 -
Car09g00524 1002 MobiDBLite consensus disorder prediction 714 738 - -
Car09g00524 1002 MobiDBLite consensus disorder prediction 717 732 - -
Car09g00524 1002 MobiDBLite consensus disorder prediction 840 859 - -
Car09g00524 1002 MobiDBLite consensus disorder prediction 840 854 - -
Car09g00524 1002 Hamap Argininosuccinate lyase [argH]. 66 608 IPR009049 GO:0004056|GO:0042450
Car09g00524 1002 ProSiteProfiles dnaJ domain profile. 632 697 IPR001623 -
Car09g00524 1002 Pfam Lyase 70 238 IPR022761 -
Car09g00524 1002 Pfam Lyase 265 393 IPR022761 -
Car09g00524 1002 Pfam DnaJ domain 632 694 IPR001623 -
Car09g00524 1002 ProSitePatterns Fumarate lyases signature. 368 377 IPR020557 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00524 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - csv:101205167 866.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00524 Car-Chr9:2941902 Car11g01178 Car-Chr11:9448501 1.11E-21 dispersed
Car17g00355 Car-Chr17:2246865 Car09g00524 Car-Chr9:2941902 5.36E-12 dispersed
Car01g01261 Car-Chr1:11461901 Car09g00524 Car-Chr9:2941902 0 wgd
Car12g00183 Car-Chr12:1132799 Car09g00524 Car-Chr9:2941902 0 wgd
Car05g00489 Car-Chr5:2828477 Car09g00524 Car-Chr9:2941902 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g508 . Blo12g00731 . Bda03g00457 . Bpe04g00418 Bma04g00432 . . . Cma01g01645 Cma09g00593 . . . Cpe06g00454 . . . . . . . . . . . . . . . Cone6ag1532 . . . Lsi04g02278 Csa03g04491 Chy04g00209 . . . . . . . . . Sed14g1000 Cmo01g01695 Cmo09g00579 . . . Car09g00524 . . Bhi09g02496 Tan01g3850 Cmetu01g2584 . Hepe01g2168 Mch11g0707 . Cla11g01422 Cam11g1478 Cec11g1508 Cco11g1504 Clacu11g1639 Cmu11g1457 Cre11g1875 . . . Cme04g00239
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car09g00524 . 568 890 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 51.0 5.4e-84 308.5
Car01g01261 . 3 274 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 57.2 7.8e-83 304.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020012 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00524 Car_Chr09 FPKM 20.122528 22.474144 23.403563 23.134867 18.489632 20.424389 18.612469 43.957783 42.687218 39.173347