Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00530 ATGGCCGATCAGTCGATACTCCAATTGGATATTCACGATCATCACGTAGTCATGGACAATGGTATACTGGCAGTGACACTGTCGAAGCCATATGGGAATGTTACAGGGATAAAATACAGCAGCATTGACAACGTTTTAGAAGTTCGTGATAAAGAGGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCCGGCACACCAGGAACGACAGGAACATTCGACGAGATGAGAGGAAAAGAATTTGAAGTGGTAGTGCAAAATGAGGAACAAATAGAGCTCTCATTCAAAAGGAATTATTCATTTAAGGACAAGGAAGTTCCATTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTCTACTCCTACGCCATCTATGAGCACTTGAGGGAATGGCCGCCATTCAACCTTCCTCAAACCCGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCATTACATGGCGATAGCAGATAACAGAAAGAGATCGATGCCACTCCCTGACGATAGAGTAGGCGGCAGAGGCAAAACCTTGGATTTTCCTGAAGCTGTATTGCTTGTCCATCCTAGAGAAGCTGCGTTCAAGGGAGAGGTGGACGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTTCCGACGACCCTCCGGTGGGTTTCTGGCAAATCACTCCGAGCAGCGAGTTCCGATCCGGCGGACCGCTCAAACAGAACCTCACCTCTCATGTGGGACCATATGCTCTTACGATGTTTCTTAGCGCTCACTATGGAGGAGAGGAGTTGGTGCTGAAGCTGAATGCTGATGAGCCGTGGAAGAAAGTGTTTGGGCCTGTCTTTTTCTATCTTAATTCTGTTCCTAATGGAAGGGATCCACTTTGTTTATGGGAAGATGCTAAAATTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCAGCTTCTCAGAATTTCCCACCACCAAACCAACGTGGTAGATTGACTGGCAACTTATATGTCCTTGACACATATGTTAACCAAGAGCAAATGCCGGCAGGTGAGGCATATGTGGGACTGGCAGCGCCGGGAGATGCTGGATCATGGCAGACCGAAACCAAGGGCTACCAATTTTGGACCAAAACAGATGCATATGGCTCGTTTAGCATCGAAAATGTACGCATCGGCGACTACAATCTTTATGCATGGGTTCCTGGCTTCATTGGTGACTACCGTTACGACGTTGTCATTAGCGTCTCTGCAGGTAGTGATATGGACGTGGGAGATCTTGTTTTTGAGCCGCCTAGGAATGGTCCAACGTTGTGGGAAATAGGCATTCCTAATCGCTCTGCAGCTGAATTCTATATTCCTGATCCTAACCCAAATTACATTAACAAATTATACGTCCACCATCCAGATAGATTCAGGCAATATGGACTGTGGGAGAGATATGCAGAATTATATCCTGATACAGACTTAGTATATACCGTTGGAGTCAGTGATTACACAAAAGATTGGTTCTTCGCTCATGTTAATCGGACTAGAAATGATGGGTCTCATTTACCAACCACGTGGCAAATCAAGTTTACACTCGATAACAACATAGATAAGAGCGGTATCTATAAATTGCGAGTGGCTTTGGCCACCGCCAATGTTGCTGAATTACAGATTCGGGTGAACAGTTCAGAAGTAGATCCTGCTCTATTTACGACTGGACAAATTGGGCACGACAATGCAATCGCAAGACATGGAATTCATGGACTCTATCGACTCTATAGTGTCGACATGTCGGGATCTGTACTGATAGAAGGAGAGAACACCATCTTCCTTTCGCAAATTATAAATACTTCATCTTTCAACGGCGTCATGTATGATTATATCCGCCTCGAAGGCCCCCCATCCGTCGTCTCTACAAATCCATAA 1938 44.69 MADQSILQLDIHDHHVVMDNGILAVTLSKPYGNVTGIKYSSIDNVLEVRDKEAHRGYWDLVWNSGTPGTTGTFDEMRGKEFEVVVQNEEQIELSFKRNYSFKDKEVPLNIDKRFIMLRNSSGFYSYAIYEHLREWPPFNLPQTRIVFKLRKDKFHYMAIADNRKRSMPLPDDRVGGRGKTLDFPEAVLLVHPREAAFKGEVDDKYQYSCENKDLKVHGWISMDPSDDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALTMFLSAHYGGEELVLKLNADEPWKKVFGPVFFYLNSVPNGRDPLCLWEDAKIQMTKEVQSWPYSFPASQNFPPPNQRGRLTGNLYVLDTYVNQEQMPAGEAYVGLAAPGDAGSWQTETKGYQFWTKTDAYGSFSIENVRIGDYNLYAWVPGFIGDYRYDVVISVSAGSDMDVGDLVFEPPRNGPTLWEIGIPNRSAAEFYIPDPNPNYINKLYVHHPDRFRQYGLWERYAELYPDTDLVYTVGVSDYTKDWFFAHVNRTRNDGSHLPTTWQIKFTLDNNIDKSGIYKLRVALATANVAELQIRVNSSEVDPALFTTGQIGHDNAIARHGIHGLYRLYSVDMSGSVLIEGENTIFLSQIINTSSFNGVMYDYIRLEGPPSVVSTNP 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2983546 2988866 - Carg03012-RA Car09g00530 154267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00530 645 Pfam Polysaccharide lyase family 4, domain III 445 634 IPR029411 -
Car09g00530 645 Pfam Polysaccharide lyase family 4, domain II 360 430 IPR029413 -
Car09g00530 645 Pfam Rhamnogalacturonate lyase family 10 201 IPR010325 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car09g00530 Car12g00194 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00493 Car-Chr3:5101912 Car09g00530 Car-Chr9:2983546 0 dispersed
Car07g00516 Car-Chr7:2605890 Car09g00530 Car-Chr9:2983546 0 dispersed
Car12g00194 Car-Chr12:1225621 Car09g00530 Car-Chr9:2983546 0 wgd
Car03g00778 Car-Chr3:6488716 Car09g00530 Car-Chr9:2983546 0 wgd
Car04g01242 Car-Chr4:7163961 Car09g00530 Car-Chr9:2983546 2.67E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00530 K18195 - csv:101204193 1155.2