Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00532 ATGGGGAGATGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAAGTGACTTTCTCGAAGCGTAGGAGCGGACTGCTGAAGAAGGCGGAAGAACTGGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACTAACAAACTCTACGAATACTCCAGCTCCAGGGAAGCAGCAATGTTACGGCAGCAACTGCAGAGCTTACATGAAAATCATCGGCAAATGATGGGTGAAGAGCTGACTGGTCTAAGCGTCAAAGATCTGCAGAATCTAGAAAATCAATTGGAGATGAGTCTCCGTGGCATCCGTATGAAGAAGGTAAACCTAATTCACCAAGACAATATGGAACTCTATAAGAAGGTAAACCTAATTCATCAAGAAAATCTGGAATTACAGAAAAAGGCCTATGGAACAAAGGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTAGTCTTGGAGAGGATGCAAGCATACCTATCGACCTTCAGCTCAGCCAGCCACAGCCACAAGACCATGAGGCACCAGAAAGAGCTACAAAACTAGGCAGACTATAG 579 45.6 MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSSREAAMLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEMSLRGIRMKKVNLIHQDNMELYKKVNLIHQENLELQKKAYGTKDANGAHISSLTNGLSLGEDASIPIDLQLSQPQPQDHEAPERATKLGRL 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2996348 3006409 + Carg03014-RA Car09g00532 154269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00532 192 Coils Coil 63 83 - -
Car09g00532 192 ProSiteProfiles K-box domain profile. 56 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car09g00532 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car09g00532 192 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car09g00532 192 Pfam K-box region 58 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car09g00532 192 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car09g00532 192 MobiDBLite consensus disorder prediction 171 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00532 Car-Chr9:2996348 Car16g00251 Car-Chr16:1590857 6.00E-62 dispersed
Car03g00779 Car-Chr3:6495384 Car09g00532 Car-Chr9:2996348 8.13E-54 wgd
Car04g01240 Car-Chr4:7144068 Car09g00532 Car-Chr9:2996348 1.57E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4068 PF01486 K-box 7.20E-21 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00532 K09264 - csv:101203545 314.694