Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00538 ATGGAGCTCAATCAACACTACTTGTTTGAAGAACTCTTTGCTTTGAAAAGAGAAGTCGATTGGGAATTTGCAATGCCCACAGACATTAATGCCTGGAATTTTGATTGCTCTGATTCTATGCCAATGGATGAGCTGAACCTTAGTTACTTTCTTAATGGCCAAGGTCACTATTCTTTTCCCGCCGATCAGTTCACGGCGGCGGCGAGTACCGGCGATTCGATGAGTTTTGAGGTTTATAATGGGGAATATCCGATTATGAATATGGAAGAGGAGGAGCTTGGAATTCTGGAGGATGAAATTCATAATCTTGAAGTTCAGGCCAATTGTAAAGTGGAAGCTGTTCAATCTCCTGAAGAAATCGTTCCCAACGCCGGCGATCTTGGGCCAAAAATCGTGAATTCGAATCGGAAGAAGCTTCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGCCTTAATGATCGCCTCTCCATGCTCCGATCCATTGTCCCCAAAATCAGCAAGATGGATCGAACTGCGATTCTCGCGGACGCGATTGAGTACGTGAAGGAACTGGTGGAGAAAATCACGAATTTGCAGAGGGAAATTGAAGCGGGGAATGATCCGAATAAGTTGGGGATTTTAAGAGATTTAAAAAGGAATGAATATTTGGTGAGAAATTCGGCGAAGTTTAATGTGGAGAGGCGAGAGGGGGAGACTGGGATAGAGATTTGCTGCGCGGCCAAGCCAGGGCTGTTGCTGTCCACTGTCCAAACTCTCGAAGCGTTGGGGCTTGATATTCAGCACTGTGTCGGAGAGGAGCAAAGACGTCGTATGAGCACGGAAGAAGTAAAGCAAGCGTTATTTCAAAATGCTGGGTACGGAGGAAGATGCCCGTAG 894 47.09 MELNQHYLFEELFALKREVDWEFAMPTDINAWNFDCSDSMPMDELNLSYFLNGQGHYSFPADQFTAAASTGDSMSFEVYNGEYPIMNMEEEELGILEDEIHNLEVQANCKVEAVQSPEEIVPNAGDLGPKIVNSNRKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELVEKITNLQREIEAGNDPNKLGILRDLKRNEYLVRNSAKFNVERREGETGIEICCAAKPGLLLSTVQTLEALGLDIQHCVGEEQRRRMSTEEVKQALFQNAGYGGRCP 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3044325 3045499 + Carg03020-RA Car09g00538 154275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00538 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Car09g00538 297 Coils Coil 86 106 - -
Car09g00538 297 Coils Coil 180 200 - -
Car09g00538 297 Pfam Helix-loop-helix DNA-binding domain 147 190 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00509 Car09g00538 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00521 Car-Chr7:2631738 Car09g00538 Car-Chr9:3044325 9.78E-58 dispersed
Car09g00538 Car-Chr9:3044325 Car12g00162 Car-Chr12:929971 2.08E-78 dispersed
Car03g00782 Car-Chr3:6511291 Car09g00538 Car-Chr9:3044325 1.52E-70 wgd
Car04g01234 Car-Chr4:7104038 Car09g00538 Car-Chr9:3044325 2.06E-117 wgd
Car05g00509 Car-Chr5:2951105 Car09g00538 Car-Chr9:3044325 6.34E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4069 PF00010 HLH 3.90E-10 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00538 - - cmax:111480299 348.591